Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3000 ATGGAGAAAACAGGCGATGAGTCTCCGAAGAATAAAGTAAAATTCCTTTGCAGTTACGGCGGAAAGGTTCTTCCAAGACCCTCCGATGGGGTCCTTAAGTATGTCGGTGGCGAGACTCGCGTCGTTTGTGTCCCTCGTGACATCACTTTCTCAGAGATGATGAAGAAGGTGAATGGCATGGTTGATGGAGAGGTGGTGTTCAAGTACCAGGTGATCCCAGAAGAACTTGATGCATTGGTAACAGTTAGAACAGATGAGGATCTGAAGCACATGATTGAGGAACATGATCGCCACGGGACCAGTGGATCCCCACTGCTTCGCACATTTCTATTCCCTTCAAAGGCGCTTTTGGTTGACACACAGATTCAAATGCAAGGGCAACCAGCAGCACCACATCCAGTTCTATCTGTTGAACCATATTGGTTAGAGCAACGTTACCTTGATGCCATCAATGGAATAGTCCGGCGGACAAGCCCCAGGTCTAAGTATGCGCCGCACTCTGCATGTTCTTCACCAAAATCAACCTCCCCAGATGGACATACTAACGCAGAATCGCCCTTCCACACCGGTTTGCAGCAGTTACAGCAGAGTAATACAATGCAAAGAGTGAGAAGCTCTCCAAGTCTATCGAACCTAACAAGCACCAGCAGCAACAATACACAAGCATCACTGCAGCCGGTTGATCATGGTGTTTGTAGTAGTAATAATCATTCTTTACAAAAAAGTAGTAGTTGTCATCATTATCACCACCACCCCCCTCTTGTTGGATATAGACCCATACAAGAACAAGGGATAGGAATGGGGATGGGAAGGTCATCTCCATGGAATATGAATATGATGATAGATAATAATAATAATAATTTAAGTAGTAACACTAGCAGCAGTAGGGGTGTTAATTACTATTACTCCACTGCAAACAGACCCCATAAAGCTTATGCCTACCATGATGACTCTGCTGGTCATATTAAGGTTGAAAGAGTTCACTCCGTCCCCCGAAGTCCCAAAATGTCTATATGGGAATGA 1023 0.4506 MEKTGDESPKNKVKFLCSYGGKVLPRPSDGVLKYVGGETRVVCVPRDITFSEMMKKVNGMVDGEVVFKYQVIPEELDALVTVRTDEDLKHMIEEHDRHGTSGSPLLRTFLFPSKALLVDTQIQMQGQPAAPHPVLSVEPYWLEQRYLDAINGIVRRTSPRSKYAPHSACSSPKSTSPDGHTNAESPFHTGLQQLQQSNTMQRVRSSPSLSNLTSTSSNNTQASLQPVDHGVCSSNNHSLQKSSSCHHYHHHPPLVGYRPIQEQGIGMGMGRSSPWNMNMMIDNNNNNLSSNTSSSRGVNYYYSTANRPHKAYAYHDDSAGHIKVERVHSVPRSPKMSIWE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3000 340 SMART PB1_new 27 113 IPR000270 GO:0005515
Tpr2g3000 340 MobiDBLite consensus disorder prediction 163 181 - -
Tpr2g3000 340 MobiDBLite consensus disorder prediction 195 235 - -
Tpr2g3000 340 Pfam PB1 domain 32 112 IPR000270 GO:0005515
Tpr2g3000 340 PANTHER OS05G0427100 PROTEIN 6 309 - -
Tpr2g3000 340 Gene3D - 33 112 - -
Tpr2g3000 340 PANTHER OS05G0427100 PROTEIN-RELATED 6 309 - -
Tpr2g3000 340 SUPERFAMILY CAD & PB1 domains 28 114 - -
Tpr2g3000 340 CDD PB1_UP2 16 111 - -
Tpr2g3000 340 MobiDBLite consensus disorder prediction 158 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3000 Tpr-Chr2 34284423 34287483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3000 12 160 MAP Kinase Kinase Kinase AT5G57610 44.000 2.78e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3000 - - mtr:MTR_2g005700 449.514