Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2972 ATGCAACAACAACGTCAATCCAATTCAGCCCATGCTCCTCAGCACAATTGGTTGCAGCATGCTAATTCTCACAAGAATTTCTCCTGCCAGGCCAAATTTTTGAGCTCCAATTTCCTCTTTTCTGACCCAACTAAGAAACCAATCGATGCCGCCGCTGGTAACATCAGGTTTGTAGTTCAACGAGGTCAAAATATTCAAAGAGCACATGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTAAAGATATCTAGTAGGAATTATGTCCAACCTGGAAAATATGTTAAAGTTACTTCTCAGTTTCAACAAGACAGGACGACAACTTCCTTCCAAGGAAGCTATGAGAATGTCAATCTTAACCGGGCTGATGTCACCGCAACTCCAACCGTCATCAATCATACTTCTCGGGTTATAGATAGTTCAGTTAATTATCACACAAAGTACACAAGCCCACCCAACGAGTCTACAAAATGTGTAGCTGATAATATTATTAATGTCGATGACGACGACATACTCGAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAGTCCACTTGCACTCCTCAACCACCGGTGTCCAAATTTCCTCCTGTTACACCATTTGCAGATAAGGTTAATTTTGCTGGGCAGGGGGATACTTTTTTGCCACCAGAGCTGTGCTTGGATTGCATCCACGGCTACAAGTTAGGGCTATGCCCTGAAGCAGCAAGTCATTTGCAGGAATTTAAGGATAATCTTATTGCTATCTCTAACGAACTGATTGACAATGTTGAAAATCTCAGTTCTGTGCAGATAGCAAAGCTTCGTGATGACAGGTCACAGCTGAATAAGCAAATTCAACAACTTGAAAAATATATTCATTCCAGTAATCTTGAAGAAGAAAGACAAAAGTCACATTTTGCCACATCCATGGCACCACCTACATCTTTTGTTTATGAAACACCCCAGCGAAATGTCATCAGTAGTGGACCAAATAGATATGATGGCCAGGCTTATATGGGTAATGGTACATATGAGCCATCATACCAGTCTTCGTATGTCATGCCATCAGGTCCGGTGGAGAGAGAACCATTCATTCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGATAAACGGTGGAGCAGCCGGGACTTTTCTTGGACTAAAGAGTTAGAGGTTAATAATAAGAGAGTATTTGGAAATCACTCATTTCGCCCCAACCAAAGAGAGGTAATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAAAGTCTGACCTATCAGCTACCAGCTCTCATTAATCCTGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTACAGGCAAATATACCTGCTGCTTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGATATCCTTAGAGAACTTAATTCTGATTATTGTAAATACAAGTTGTTATATGTGACACCCGAAAAGGTTGCCAGAAGTGACGTTCTTCTGCGACACTTGGAGAGTTTACACGTTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTGTATTGAAACAGAAATTCCCAAATACTCCCGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTTGTTAACTGCGTTGTTTTTCGGCAAAGTTTTAATCGCCCAAATTTACGGTATTCCGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGATAAATTTATCAGGGAAAATCATTTTGATGAATGTGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGCGGGCATAAATGTGCATTTTATCATGGGAGCATGGATCCTGATCAACGTGCTTTTGTTCAAAGGCAATGGAGCAAAGATGAGATCAATATAATTTGTGCTACCGTGGCATTTGGAATGGGTATTAACAAACCTGATGTTCGTTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGCGGACGAGCTGGTAGAGATGGTCAGAGTTCCTCCTGTGTATTGTATTATAGCTACAGTGATTATATCCGAGTTAAGCATATGTTAAGCCTAGGAGCAATAGAGCAAAGCCCCATGCCATCTGGATACAGTCGTTCAAATGCGATAAATTCAGGAAGGATACTAGAAACAAACACTGAAAACCTTTTGCGCATGGTCAGTTATTGTGAAAATGATGTGGATTGTCGGCGCCATATTCAGCTCGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGTGTGAAGGTCACAAGTTTCGTTGAGAAGGATGTCACCGAAAGTGCAAAACAATTGGTTGAACTCGTTAAGCTAACAGGACAGAAGGTCTCAGCATCTCATATATTAGAGGTGTATCGTGGTTCCTTAAGCCAGATGGTCAAGAAACACCGACATGAGACTGTGCGTCTTCATGGTTCTGGGAAGCATCTAGCCAAGGGTGAGGCTTCCCGTATATTGCATCATCTTGTCGTTGAGGATTTTCTTGCGGAGGAGGTAAAGAAAAGTGATTTTTATGGATCAGTATCATCAGTATTGAAGGTAAATGAGACGAAGGTCCGTAATACGTTGTTTGGTGGCCAAAGAATTATATTGAGATTCCCGTCTTCTGTGAAAGCATCAAAGCCTGGGAAATGTGATATAACTCCAGCCAAAGGTTCTCTGACTTCTGGGAAGTTGAATCTTCCCATTGACATTCCTGACCAACCTCAAACTGAAGTAGACGTGAATCTAGCAGCTAATTTGTACACTGCTCTGAGGATGTTGCGGACAGCTCTTTGTAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGCAATGCTACGTTGCAGCAGATAAGCAAGAGACTACCAAGAACAAAGGAAGAACTTCTTGATATCAATGGCATTAGCAAGACTAAAGTAAGCAAGTATGGGGATCGGTTACTGGAAACCATTGAGAAAACCATAAACGAATATTACAATACGGATAAAAACAGCAGTGGCAGCAAAGGCAGTTCTGATTCAATGAAAAGAAGACGAGAGGCAAATAGAGATCCAGATTCAAATGCTAAGGATGATGATGATGATTCCTTAATCAAAAGTACCGGTCGCTCCAAGAAAAGGACGGTAAGGAGACAAACTAAAAAGGCTGAAATATATGATTCAGAAGAGGAAGATTATTACCATGGATGCCTTGATGAGGACCTAGACTGTATCAATATTGACGATGAGACAATAGATAAAATAACTGGTACAGATGCTGCAGGAAGAGTACTACCTCAATGGACAGCATCTTGA 3462 0.4093 MQQQRQSNSAHAPQHNWLQHANSHKNFSCQAKFLSSNFLFSDPTKKPIDAAAGNIRFVVQRGQNIQRAHVEKAWLALSSLKISSRNYVQPGKYVKVTSQFQQDRTTTSFQGSYENVNLNRADVTATPTVINHTSRVIDSSVNYHTKYTSPPNESTKCVADNIINVDDDDILENIDVDQIVEKYQSTCTPQPPVSKFPPVTPFADKVNFAGQGDTFLPPELCLDCIHGYKLGLCPEAASHLQEFKDNLIAISNELIDNVENLSSVQIAKLRDDRSQLNKQIQQLEKYIHSSNLEEERQKSHFATSMAPPTSFVYETPQRNVISSGPNRYDGQAYMGNGTYEPSYQSSYVMPSGPVEREPFIPKIIEVNYIEGSGDKRWSSRDFSWTKELEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQDILRELNSDYCKYKLLYVTPEKVARSDVLLRHLESLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLRYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPDQRAFVQRQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQSSSCVLYYSYSDYIRVKHMLSLGAIEQSPMPSGYSRSNAINSGRILETNTENLLRMVSYCENDVDCRRHIQLVHFGEKFDSSTCQKTCDNCVKVTSFVEKDVTESAKQLVELVKLTGQKVSASHILEVYRGSLSQMVKKHRHETVRLHGSGKHLAKGEASRILHHLVVEDFLAEEVKKSDFYGSVSSVLKVNETKVRNTLFGGQRIILRFPSSVKASKPGKCDITPAKGSLTSGKLNLPIDIPDQPQTEVDVNLAANLYTALRMLRTALCREAGEGVMAYHIFGNATLQQISKRLPRTKEELLDINGISKTKVSKYGDRLLETIEKTINEYYNTDKNSSGSKGSSDSMKRRREANRDPDSNAKDDDDDSLIKSTGRSKKRTVRRQTKKAEIYDSEEEDYYHGCLDEDLDCINIDDETIDKITGTDAAGRVLPQWTAS* 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2972 1153 Gene3D - 592 811 IPR027417 -
Tpr2g2972 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 733 IPR027417 -
Tpr2g2972 1153 CDD DEXHc_RecQ 392 591 - -
Tpr2g2972 1153 ProSiteProfiles HRDC domain profile. 968 1050 IPR002121 GO:0003676
Tpr2g2972 1153 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 101 1121 - -
Tpr2g2972 1153 MobiDBLite consensus disorder prediction 1061 1091 - -
Tpr2g2972 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 590 858 IPR027417 -
Tpr2g2972 1153 Gene3D HRDC domain 967 1056 IPR044876 -
Tpr2g2972 1153 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 393 868 IPR004589 GO:0004386|GO:0006310
Tpr2g2972 1153 Pfam Helicase conserved C-terminal domain 608 714 IPR001650 -
Tpr2g2972 1153 Gene3D - 815 925 IPR036388 -
Tpr2g2972 1153 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 409 584 IPR014001 -
Tpr2g2972 1153 PANTHER DNA HELICASE RECQ FAMILY MEMBER 101 1121 - -
Tpr2g2972 1153 ProSiteProfiles Rhodanese domain profile. 624 666 IPR001763 -
Tpr2g2972 1153 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 609 754 IPR001650 -
Tpr2g2972 1153 CDD SF2_C_RecQ 592 724 - -
Tpr2g2972 1153 SMART RQC_2 817 928 IPR018982 GO:0006260|GO:0006281|GO:0043138
Tpr2g2972 1153 Pfam HRDC domain 973 1040 IPR002121 GO:0003676
Tpr2g2972 1153 Pfam RecQ zinc-binding 726 807 IPR032284 -
Tpr2g2972 1153 SMART ultradead3 397 600 IPR014001 -
Tpr2g2972 1153 Coils Coil 266 293 - -
Tpr2g2972 1153 SUPERFAMILY HRDC-like 972 1044 IPR010997 GO:0000166|GO:0044237
Tpr2g2972 1153 Pfam DEAD/DEAH box helicase 403 571 IPR011545 GO:0003676|GO:0005524
Tpr2g2972 1153 SMART helicmild6 634 715 IPR001650 -
Tpr2g2972 1153 SMART hrdc7 968 1050 IPR002121 GO:0003676
Tpr2g2972 1153 MobiDBLite consensus disorder prediction 1051 1103 - -
Tpr2g2972 1153 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 523 532 IPR002464 -
Tpr2g2972 1153 Gene3D - 365 591 IPR027417 -
Tpr2g2972 1153 Pfam RQC domain 814 930 IPR018982 GO:0006260|GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2972 Tpr-Chr2 34073234 34080935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2972 624 728 Eukaryotic Initiation Factors Gene Family AT1G72730 24.762 2.30e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2972 K10901 - gmx:100800006 1739.93