Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2968 ATGGAGAACAATTTCAGTTCATATAATCCTCTTCATGACTTAGCCTCTAGCTTGAAGAGAAAGCACCATCATGAAGAGCATCTTCATGAAGATTATACATCTTCTTCATCTTTCAATCTAAGGAATATTTCAAAGCTCATTCTTCCTCCACTTGGTGTTTCAAAGCAAAATCCAGTTTGCTCAAAAGGGTGGATCATATCCCCAATGGATTCTAGATACAGGGGTTGGGAGAGTTTTATGGTTATTTTGGTAGCTTATTCTGCATGGGTTTATCCTTTTGAAGTTGCTTTCATGCATTCATCTCCAAATAGCAAACTCTATAAGGTGGACAATATTGTTGATCTTTTCTTTGCTGTTGATATTGTTTTGACATTCTTCGTCGCATACATAGATCGAACAACTCATCTACTTGTACGAGATTCCAAAAAAATTGCTGTCAGGTATTTGTCAACATGGTTCCTAATGGATGTGGCATCAACTATACCATATGAAGCAATAGGCTTTTTTTTAACTGGAAAACACAAATTGGGTCTACCTTACTTCCTCTTGGGAATGCTAAGATTTTGGAGAATCAGACGTGTCAAGCAATTCTTCACTAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCAGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAGTTCATTGTGCCGGGTGCTTGTATTACATGCTAGCTGATATGTACCCTCATGAAGGAAAGACATGGATTGGAGCAGTGATTCCAAACTTTAGAGAGACAAGCCCTCGAATCAGATATATTTCAGCCATTTACTGGTCCATCACTACCATGACAACTGTTGGTTATGGTGACCTTCATGCTGTCAACACCATGGAAATGATTTTCATTATTTTCTACATGCTCTTCAACCTTGGTCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGCACCATGGAATTTAGAAATAGCATTGAAGCAGCATCAAACTTTGTGTGCCGAAACCGGTTGCCTCCAAGGTTAAAAGAACAGATCCTAGCTTACATGTGTTTAAGATTTAAGGCAGAGAGCTTGAATCAACACGAACTAATTGAACAGCTACCAAAGTCAATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTCCAACTGTCGAGAAAGTCTATCTCTTCCAAGGCGTCTCAAAAGAAATCCTTTTGTCCCTAGTTGCAAAAATGAAGGCAGAATACATACCACCTAGAGAGGATGTTATAATGCAAAATGAATCACCAGATGATGTTTATATTATAGTGTCAGGAGAAGTAGAGATCATTGATAGTGTTATAGAGAAAGAGAGAACTTTAGGGACTCTAACAACAGGAGACATGTTTGGAGAAGTTGGTGCACTTTGTTGCAGGCCTCAGAGCTTTACCTACAGAACCAAGACTCTCACACAGCTTCTGAGGGTGAAAACCAATACTCTTATAGAAGCAATGCAGATTAAAAAAGAAGACAATATACTAATACTCAAAAATTTCCTTCAGCATTTCAAGCAGCTTAAGGATTTGAGTATCAAAGATTTAATGGTGGAAAATGTGGAAGAAGAGGACCCTAACATGGCTGTGAATTTGTTAACTGTGGCCAGCACAGGTAATGCTGCTTTTCTTGAGGAGCTTCTGAGAGCAGGTTTGGATCCTGACATTGGAGACTCAAAAGGGAAAACTCCATTGCACATAGCAGCCTCAAACGGGCATGAAGAGTGTGTTAAAGTCTTGCTCAAGCATACATGCAACATACATATAAAAGATATCAATGGCAATACTGCATTGTGGTATGCTATAGCATCAAATCATTACTCAATATTCAGAATCCTCTATCAGCTATCTGCTCTTTCCGATCCATACACAGCAGGAAATATCCTATGTGAGGCAGCAAAAAGAAATGATTTAACAGTGATGAATGAGCTTTTAAAACAAGGACTAAACATTGACTCCAAAGATCGACATGGCATGACAGCTATACAAATTGCTATGGCAGAAAATCTTGTGGATATGGTTCAACTGCTTGTCATGAACGGTTCAGATGTCGCTGATGTACATGTTCACGAATTTTCTGCATCCACCTTAAATGAAATGCTGCAGAAACGCGAAATCGGGCATCTAATTAATGTGAGTGAGACAATGCCTAGTGAGTTTGTATTAAAGGGGAAAAATCAAGAAGAACAGAAGCAAATTTGGGGACGATTTAATGGACTAGAGTGTCCGAGAGTAAGCATATATAGAGGTCACCCAGAAGTGAGAAGAGAAAAAGGTTTTATTGAAGCTGGAAAGTTAATAAGGCTGCCTGATTCATTGGAAAAGCTCAAAAGTATTGCAGGTGAAAAATTTGGGTTTGATGCGAGAGGTGCAATGGTGACAAATGAAGAAGGAGCAGAAATTGACAGTATTGATGTGATCAGAGATAATGATAAACTTTTTTTTTGTTGA 2475 0.3867 MENNFSSYNPLHDLASSLKRKHHHEEHLHEDYTSSSSFNLRNISKLILPPLGVSKQNPVCSKGWIISPMDSRYRGWESFMVILVAYSAWVYPFEVAFMHSSPNSKLYKVDNIVDLFFAVDIVLTFFVAYIDRTTHLLVRDSKKIAVRYLSTWFLMDVASTIPYEAIGFFLTGKHKLGLPYFLLGMLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYMLADMYPHEGKTWIGAVIPNFRETSPRIRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHELIEQLPKSICKSICQHLFFPTVEKVYLFQGVSKEILLSLVAKMKAEYIPPREDVIMQNESPDDVYIIVSGEVEIIDSVIEKERTLGTLTTGDMFGEVGALCCRPQSFTYRTKTLTQLLRVKTNTLIEAMQIKKEDNILILKNFLQHFKQLKDLSIKDLMVENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVKVLLKHTCNIHIKDINGNTALWYAIASNHYSIFRILYQLSALSDPYTAGNILCEAAKRNDLTVMNELLKQGLNIDSKDRHGMTAIQIAMAENLVDMVQLLVMNGSDVADVHVHEFSASTLNEMLQKREIGHLINVSETMPSEFVLKGKNQEEQKQIWGRFNGLECPRVSIYRGHPEVRREKGFIEAGKLIRLPDSLEKLKSIAGEKFGFDARGAMVTNEEGAEIDSIDVIRDNDKLFFC* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2968 824 PRINTS EAG/ELK/ERG potassium channel family signature 110 120 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr2g2968 824 PRINTS EAG/ELK/ERG potassium channel family signature 121 130 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr2g2968 824 PRINTS EAG/ELK/ERG potassium channel family signature 263 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr2g2968 824 PRINTS EAG/ELK/ERG potassium channel family signature 289 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr2g2968 824 PRINTS EAG/ELK/ERG potassium channel family signature 307 316 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr2g2968 824 Gene3D Jelly Rolls 360 535 IPR014710 -
Tpr2g2968 824 Gene3D - 75 316 - -
Tpr2g2968 824 CDD CAP_ED 393 496 IPR000595 -
Tpr2g2968 824 SMART cnmp_10 393 510 IPR000595 -
Tpr2g2968 824 Pfam Ankyrin repeats (3 copies) 544 622 IPR002110 GO:0005515
Tpr2g2968 824 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 36 823 - -
Tpr2g2968 824 Pfam Ion transport protein 75 322 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr2g2968 824 ProSiteProfiles Ankyrin repeat profile. 568 600 IPR002110 GO:0005515
Tpr2g2968 824 Pfam KHA, dimerisation domain of potassium ion channel 751 823 IPR021789 -
Tpr2g2968 824 ProSiteProfiles Ankyrin repeat region circular profile. 665 692 - -
Tpr2g2968 824 SUPERFAMILY Voltage-gated potassium channels 68 316 - -
Tpr2g2968 824 Gene3D - 537 719 IPR036770 -
Tpr2g2968 824 PRINTS Ankyrin repeat signature 569 584 IPR002110 GO:0005515
Tpr2g2968 824 PRINTS Ankyrin repeat signature 681 695 IPR002110 GO:0005515
Tpr2g2968 824 Pfam Cyclic nucleotide-binding domain 413 496 IPR000595 -
Tpr2g2968 824 SUPERFAMILY Ankyrin repeat 529 702 IPR036770 -
Tpr2g2968 824 PANTHER POTASSIUM CHANNEL AKT1 36 823 IPR045319 GO:0005249|GO:0006813
Tpr2g2968 824 SUPERFAMILY cAMP-binding domain-like 320 511 IPR018490 -
Tpr2g2968 824 ProSiteProfiles cAMP/cGMP binding motif profile. 393 512 IPR000595 -
Tpr2g2968 824 SMART ANK_2a 601 631 IPR002110 GO:0005515
Tpr2g2968 824 SMART ANK_2a 665 694 IPR002110 GO:0005515
Tpr2g2968 824 SMART ANK_2a 535 564 IPR002110 GO:0005515
Tpr2g2968 824 SMART ANK_2a 568 597 IPR002110 GO:0005515
Tpr2g2968 824 SMART ANK_2a 632 661 IPR002110 GO:0005515
Tpr2g2968 824 ProSiteProfiles KHA domain profile. 752 824 IPR021789 -
Tpr2g2968 824 ProSiteProfiles Ankyrin repeat region circular profile. 568 599 - -
Tpr2g2968 824 ProSiteProfiles Ankyrin repeat profile. 665 697 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2968 Tpr-Chr2 34020693 34027724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2968 18 573 Ion Channels AT4G22200 74.199 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2968 K21867 - gmx:100798422 1389.79