Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2958 ATGGAAGAAGGAAAACATAAATCGAGTGATTCTAAGAGGAGTCATCGAGATCGTGATAGAACTGGTGAAAGAGGTAAAGATAGAAGTGATGGAAGGCACAAAGATAATAGGGAGAAGAGGGATCGTGAGTCTCGAAGACATGACAGAGAGAAAAGTACTGATTCTGAGGATAAGCATGATAGAGACAGGGAGAAGCGCAGAGATGGTAAAGAGAAGGATAGGGCACGGGTTCATGATGTCGACCGAGAAAAGAGAGATAGGAAAAGGGAAAGAGATAGAGAAGAGAAAGAAAAAGAGAGAGTAAGAGAGAAAGAAAAAGAGAGAGAAGAGAAGGAAAAGGAGAGATTAAGGGAGAAAGAAAGAGATAGGGAAGATAAGGAAAAGGAGAGAATGAGGGAGAAAGAAAGAGAGAGGGAAAGAAGGGAGGAGAAGGAGAGGATTAGAGAGAAAGAAAGGGCAAGGGAAAAGAGGGATCATGAGAGAGAGAAGGAAAAAGAAAAGGAAAGAGATAAAGGCAGGAGAGGACGGGAACGAGAGCGGGAGAAGCATAGAGATGTTGATAGCGATAACAGTGACGGTGAGTTGAGGGAGAGAAATAGAAAGCGACATAAGAAAGACGACGACAGTTATAAGGGGCGGGAGAAGGAAAAGAGTTCTAGCAAGTCAAACAGGAAAGTTGATGGAATTAACGGAAGCCCTAGGAGAAAGAGCGATGGAGATGACTCTGATTCCAAAGAGAAAGAGAAAAGACTTACCCATGAGGAGGAAATGGAAGTTGAACAAAAGAGGTTGGATGATGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCAAAAGAGGAAGCAGGAAGAGGCAGAAAGAGAAAAACAAGGTGAACTAGAGTCTGGAAAGGCATGGACACTTGAAGGGGAGGAATCTGATGATGAAGATGGAACAGGTAGACATACGAGTATGGATGTAGACGAAGACGACAAACTTGCTGATAATGAACCTAGGGAGTCAATGGTGGTAGATATTGACAATGGAACAGTTGCATCCGATTTACAGAATGGAGATGCTGGTGCTCCTGCAGACGATGAGATCGACCCATTGGATGCTTTCATGAATTCTATGGTTCTTCCTGAGGTTGAAAAGTTGAACAATGCTGTTAACTCAACACCTTCTGATAAAGCTTCTGACTTGAAACCTAAGGATAAAGAGGACGAGCGTAGTAATGGTCGACAATCAAGGAAAGGTTCAAATAAATCTATTGGCAGGATAATTCCCGGTGAAGAGTCCGACTCAGATTATGCAGATCCTGATGTTGAGGGGGATCCATTAGATGAAGATGACGACGAGTTCATGAAGAGAGTAAAGAAAACAAAAGTTGAAAAGCTTTCTTTAGTTGATCACTCAAAGATCGACTATATACCATTCAAAAAGAATTTCTATATTGAAGTGAAAGAGATCTCAAAGATGACTCTTGAAGAAGTTGTATTATACAGGAAGCAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCCAAACCTGTAAAGTCATGGAACCAGACTGGACTTACTAGCAAAGTTTTAGAGACAATAAAGAAGGCAAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCGTTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCATTGCCAAAACCGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGAGAACTTGTTCAACAGATTCATAGTGACATAAAGAAGTTCACAAAGGTAATGGGTATCAGGTGTGTTCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGCGAGTTGAAACGTGGTACTGAGATAGTAGTTTGTACTCCAGGTAGGATGATTGACATACTGTGCACCAGTAGTGGAAAAATAACTAACCTGCGTAGAGTAACTTATCTGGTCATGGATGAGGCAGATCGGATGTTTGATATGGGTTTTGAACCACAAATCACAAGAATTGTTCAGAATATTCGGCCAGATCGTCAAACCGTTCTCTTCTCTGCCACTTTCCCACGCCAGGTTGAAATTTTGGCTCGCAAGGTTTTAAATAAACCCGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGTTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCCTTAGACTCTTGGAACTACTTGGAGAATGGTATGAGAAAGGAAAGATTTTGGTATTTGTCCACTCACAGGATAAATGTGATTCATTGTTCAAGGATCTAATGAAACATGGCTATCCATGTCTTTCTCTTCACGGGGCTAAGGATCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTCAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGGGTTGGGCGCACTGGCCGCGCTGGCCGAAAGGGTTGTGCTATCACATTTATTTCTGAAGATGATGCAAGATATGCACCAGATCTGGTGAAAGCTCTGGAGCTATCTGAGCAGATTGTTCCTGATGATCTAAAATCCCTCGCCGATGGCTTTATGGCAAAAGTGACTCAAGGATTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAGGCTGCAAAGAAAGCTCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGATGGTATTAGGAAGGCAGGAGGTGATATTTCACAGCACCCTGCTCTTGCTCAGATTCTTGCTGCGACCAAAGCTCCTCCAGTGCCTACTCCTATCTCTGCAACCCAACTGATTTCAAATGGTGGGCTACCTATTTCTTTGCCATCTGTTGTTGGTCTCCAGACTCCAACAGTCTTGCCTGGTACAGGGCTACCCCTTGCTACACATGACGGGGCAGCTCGAGCTGCATTAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCTCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCTGAGTGGACCGGAGCTGCTATTACCACAAGGGGACAATATTTCCCACCTGGCAAAGTCGCAGGACCTGGGGATCGCAAACTCTACTTGTTCATTGAGGGTCCTAGCGAGCAGTCAGTTAAGAGAGCCAAAGTAGAATTGAAGCGTGTTTTGGAAGACATCACTAACCAGGCTTTGCAACTACCTGGTGGAACTCAACCGGGCAAATACTCTGTTGTATAA 3456 0.4334 MEEGKHKSSDSKRSHRDRDRTGERGKDRSDGRHKDNREKRDRESRRHDREKSTDSEDKHDRDREKRRDGKEKDRARVHDVDREKRDRKRERDREEKEKERVREKEKEREEKEKERLREKERDREDKEKERMREKERERERREEKERIREKERAREKRDHEREKEKEKERDKGRRGREREREKHRDVDSDNSDGELRERNRKRHKKDDDSYKGREKEKSSSKSNRKVDGINGSPRRKSDGDDSDSKEKEKRLTHEEEMEVEQKRLDDEMEKRRRRVQEWQEQKRKQEEAEREKQGELESGKAWTLEGEESDDEDGTGRHTSMDVDEDDKLADNEPRESMVVDIDNGTVASDLQNGDAGAPADDEIDPLDAFMNSMVLPEVEKLNNAVNSTPSDKASDLKPKDKEDERSNGRQSRKGSNKSIGRIIPGEESDSDYADPDVEGDPLDEDDDEFMKRVKKTKVEKLSLVDHSKIDYIPFKKNFYIEVKEISKMTLEEVVLYRKQLELKIHGKDVPKPVKSWNQTGLTSKVLETIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDSLFKDLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQIVPDDLKSLADGFMAKVTQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALAQILAATKAPPVPTPISATQLISNGGLPISLPSVVGLQTPTVLPGTGLPLATHDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGPSEQSVKRAKVELKRVLEDITNQALQLPGGTQPGKYSVV* 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2958 1151 MobiDBLite consensus disorder prediction 430 446 - -
Tpr2g2958 1151 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 515 543 IPR014014 GO:0003724
Tpr2g2958 1151 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 187 970 - -
Tpr2g2958 1151 Gene3D - 468 724 IPR027417 -
Tpr2g2958 1151 Pfam DEAD/DEAH box helicase 540 711 IPR011545 GO:0003676|GO:0005524
Tpr2g2958 1151 Coils Coil 250 295 - -
Tpr2g2958 1151 MobiDBLite consensus disorder prediction 931 955 - -
Tpr2g2958 1151 Pfam Helicase conserved C-terminal domain 749 857 IPR001650 -
Tpr2g2958 1151 MobiDBLite consensus disorder prediction 931 945 - -
Tpr2g2958 1151 MobiDBLite consensus disorder prediction 1 338 - -
Tpr2g2958 1151 CDD SF2_C_DEAD 736 866 - -
Tpr2g2958 1151 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 187 970 - -
Tpr2g2958 1151 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 873 IPR027417 -
Tpr2g2958 1151 SMART helicmild6 776 857 IPR001650 -
Tpr2g2958 1151 MobiDBLite consensus disorder prediction 1 447 - -
Tpr2g2958 1151 SMART ultradead3 534 739 IPR014001 -
Tpr2g2958 1151 Coils Coil 77 170 - -
Tpr2g2958 1151 MobiDBLite consensus disorder prediction 394 412 - -
Tpr2g2958 1151 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 546 724 IPR014001 -
Tpr2g2958 1151 Gene3D - 725 899 IPR027417 -
Tpr2g2958 1151 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 752 896 IPR001650 -
Tpr2g2958 1151 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 670 678 IPR000629 -
Tpr2g2958 1151 CDD DEADc_DDX46 504 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2958 Tpr-Chr2 33927762 33932898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2958 502 877 Eukaryotic Initiation Factors Gene Family AT3G19760 33.158 1.87e-59 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2958 K12811 - gmx:100784306 1513.43