Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2947 ATGGGTAACTTAGCTTTCATTCTTGATCCATCTCTCAGGAGACAAGATCAAAACAACATAACACCACAATGGGAAACAGAACATGAAGATGATCAAAACCAAAATCAAAATCCACAAGCATGGATTACACTCCGATTCGTAAGACCAACTCGTCCACCAAGGCCTATTGCACCACCGCCACAACCACAAAACTTGGCACCCCAACCCAATGACAATGACGCTCCTTCGTTAGACGAGTTCTTTGATGGGATGATTCACAACAACAGCAGACCAGGGCCACCTCCCGCATCACCTTCCGCCATTGAAGCCTTGCCAATGGTGAAAGTGACAGAATCCCATTTGACAAGTGACCCGAATTGTCCAATATGCAAAGATGAGTTTGAGGTTGATGTGGAAGTGAGAGAGTTACCATGCAAACATTTCTACCATTCTGACTGCATTCTACCTTGGCTTCGCATGCACAACACTTGCCCCGTATGCCGCCATGAGATACAAGGGATCGATAATAGTAATGCTAGTTACTACTTTTCCCATAATGAGAATGAGCAACATGGGTTCATTGGGTTTGAGGAATTTACAAGCAGCATTAACTGGATCTGGAGCCAACTTGCTTTGTTTAGACCTATTCGTGCAGTTCTAGATTGGACGCGGTCCTATTTTGAATTCCATGCCCGTGCTCATAGTAGAAGTAGCTCTTGGTGGCGGGCATTGCTCATTTCGTAG 723 0.4509 MGNLAFILDPSLRRQDQNNITPQWETEHEDDQNQNQNPQAWITLRFVRPTRPPRPIAPPPQPQNLAPQPNDNDAPSLDEFFDGMIHNNSRPGPPPASPSAIEALPMVKVTESHLTSDPNCPICKDEFEVDVEVRELPCKHFYHSDCILPWLRMHNTCPVCRHEIQGIDNSNASYYFSHNENEQHGFIGFEEFTSSINWIWSQLALFRPIRAVLDWTRSYFEFHARAHSRSSSWWRALLIS* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2947 240 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 53 215 - -
Tpr2g2947 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 166 IPR013083 -
Tpr2g2947 240 MobiDBLite consensus disorder prediction 1 41 - -
Tpr2g2947 240 SMART ring_2 120 160 IPR001841 -
Tpr2g2947 240 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Tpr2g2947 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 53 215 - -
Tpr2g2947 240 CDD RING-H2_RNF126_like 120 161 - -
Tpr2g2947 240 SUPERFAMILY RING/U-box 100 167 - -
Tpr2g2947 240 Pfam Ring finger domain 119 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2947 Tpr-Chr2 33847303 33848827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2947 78 222 C3H Transcription Factor Family AT1G68180 39.041 4.11e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2947 K11982 - gmx:100793656 236.498