Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2913 ATGTCATTCCGCAGCATAGTTCGTGACGTTCGTGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAAACTTACTGGCCAGCATCATAGAGGAAAATCACATGGATCGGTGCAGGATTTGCATGACCAACCTCTAGTAATTCAAAATAGTTGCTGGGCGAACTTACCCCCAGAGTTACTATTTGATGTCATTCGACGGCTAGAGGAGAGTGAGAATACATGGCCTTCACGAAAGCATGTAGTTGCATGTGCTTCTGTTTGCCAATCTTGGAGGAATATGTGCAAGGACATTGTTAAGAGCCCTGAGTTCTGCGGCAAACTTACGTTTCCTGTGTCCCTGAAGCAGCCTGGGCCACGAGATGGAATCATTCAATGCTTTATCAAACGAGATAAATCTAACTTAACATATCACCTATTCCTTTGTTTGAGCCCTGCTTTGTTGGTTGAAAATGGAAAATTCCTTCTTTCTGCTAAGAGGACACGGAGAACAACATACACTGAGTATGTTATTTCCATGGATGCTGACAACATCTCAAGATCAAGTAATACTTACATCGGAAAGCTGAGATCAAACTTTCTTGGAACAAAATTCATTATATATGATACACAGCCTCCCTACACTACTGCTCATATATGCCCTCCGGGGACTGGGAAGACGAGCCGCAGATTTTCTAAAAAGGTATCACCTAAGGTCCCATCCGGGAGTTACAACATAGCTCAGGTAACATATGAACTAAATGTGCTCGGTACTCGAGGCCCAAGGAAGATGCACTGCATTATGCATTCAATACCAAATTCAGCACTTGATGCGGGCGGCTCCGTTCCCGGACAGCCAGAACTTATTCCCCGTTCCCTGGAGGACTCATTCAGGAGCATCTCGTTTTCAAAGTCTCTAGATCATTCCATTGAGTTCAGCAGCTCGCGGTTTTCTGATATCGGGGGATCCTATAATGAGGAAGATGACGGCAAGATGAGACCTTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAATTACAGTGCTGGTGCCTCAACTTCCGGGGACGAGTAACTGTTGCATCTGTTAAGAACTTTCAGTTGATTGCGTCCACCCAACCACCTGCTGGCGCGCCGACACCATCTCAACCAGCTCCACCGGAACATGATAAGATAATTCTGCAATTTGGCAAAGTTGGGAAAGATATGTTCACCATGGATTATCGGTACCCTTTATCTGCATTCCAAGCTTTTGCGATATGCTTGAGCAGCTTCGACACCAAGTTGGCTTGTGAATAG 1284 0.4502 MSFRSIVRDVRDSFGSLSRRSFDVKLTGQHHRGKSHGSVQDLHDQPLVIQNSCWANLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYTTAHICPPGTGKTSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIPRSLEDSFRSISFSKSLDHSIEFSSSRFSDIGGSYNEEDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2913 427 Pfam Tub family 115 422 IPR000007 -
Tpr2g2913 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 427 - -
Tpr2g2913 427 SUPERFAMILY Tubby C-terminal domain-like 103 427 IPR025659 -
Tpr2g2913 427 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Tpr2g2913 427 Pfam F-box domain 54 101 IPR001810 GO:0005515
Tpr2g2913 427 Gene3D Tubby Protein; Chain A 111 427 IPR025659 -
Tpr2g2913 427 PANTHER TUBBY-RELATED 1 427 - -
Tpr2g2913 427 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Tpr2g2913 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Tpr2g2913 427 Gene3D - 49 101 - -
Tpr2g2913 427 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Tpr2g2913 427 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Tpr2g2913 427 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Tpr2g2913 427 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Tpr2g2913 427 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Tpr2g2913 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Tpr2g2913 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2913 Tpr-Chr2 33600143 33604018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2913 1 427 TUB Transcription Factor Family AT1G76900 70.130 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr2g2913 Tub 1.9e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2913 K19600 - gmx:100814578 821.231