Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2798 ATGGGAAGAGGAAAGATTTCAATTAGAAGGATTGACAATTCAACAAGTAGGCAAGTGACTTTCTCAAAAAGAAGAAATGGATTATTGAAGAAAGCAAAAGAGTTATCAATTCTTTGTGATGCTGAAGTTGGATTGATTGTCTTTTCCAGCACTGGAAAGCTTTATGATTATTCAAGCACTAGCATGAAATCTGTTATTGATCGCTATAACAAACAGAAAGAGGAACAACATCAGCTAATGAATCCTGCTTCAGAAGTCAAGACAGAAGCAGCAAGCCTGAGACAACAACTGCAGTACTTGCAAGAAAGCCATAGGCAATTGATGGGTGAAGGACTTGCTGGTTTGGGTATTAAAGAACTGCAAAATCTGGAAAACCAGCTGGAGATTAGTCTAAAGGGTGTTCGAATGAAAAAGGATCATATTTTGACTAATGAGATCAAAGAACTACATCAAAAGGGATCTCTTGTTCATCAAGAAAATGCAGAACTCCATAAGAAGATGGACCTTGTCCAAAAAGAAAATGCAGAGCTACTGAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGCAAAAAGCAATCTTTCATGCACTATCAGAAACGGATTTGATTTACATGCACCTATCAGTCTCCAGCTAAGCCAGCCACAGCCTCAATACAGTGAACCAGCAGCCAAAGCCATGAAATTAGGATTACAGCTGCATTAG 711 0.3826 MGRGKISIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYDYSSTSMKSVIDRYNKQKEEQHQLMNPASEVKTEAASLRQQLQYLQESHRQLMGEGLAGLGIKELQNLENQLEISLKGVRMKKDHILTNEIKELHQKGSLVHQENAELHKKMDLVQKENAELLKKVYEARSTNEENAKSNLSCTIRNGFDLHAPISLQLSQPQPQYSEPAAKAMKLGLQLH* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2798 236 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 235 - -
Tpr2g2798 236 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Tpr2g2798 236 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Tpr2g2798 236 Coils Coil 83 110 - -
Tpr2g2798 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr2g2798 236 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Tpr2g2798 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 235 - -
Tpr2g2798 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr2g2798 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr2g2798 236 Coils Coil 160 180 - -
Tpr2g2798 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr2g2798 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr2g2798 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr2g2798 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr2g2798 236 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g2798 236 Pfam K-box region 84 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g2798 236 Coils Coil 117 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2798 Tpr-Chr2 32523799 32536873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2798 1 236 MADS-box Gene Family AT2G14210 60.833 3.29e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr2g2798 K-box 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2798 K09264 - gmx:100808145 371.703