Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2764 ATGGCTTCAAATCATTTGTCAGCTACGATCAGCCGTGCAGGGGCAACTAATGATGCTTTATACAAGGAATTATGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCCCGTGAAGGGGAGAGAGTTTATTACTTCCCTCAAGGTCACATGGAACAGCTCGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTACCTTCTAAAATATTATGTAAAGTGGTCAATATTCATCTTCGGGCTGAACCTGAAACAGATGAAGTATATGCACAAGTAACTTTGCTACCTGAAACCGATCAAAGTGAAGTGACAAGCCCAGACGATCCTCTGCCCGAACCTCCAAGGTGTACAGTTCATTCATTTTGCAAGACACTTACAGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTACCACCACTGGACATGACTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCACGGGAATGAATGGCATTTTCGACATATTTTTCGCGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTTTTAAGGGGTGAAAATGGAGAGCTCCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAATGTGCCATCTTCTGTTATATCTAGTCACAGCATGCATCTTGGTGTTTTGGCCACTGCATCTCATGCCATTTCCACCGGAACATTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTAAGTATTAACAAGTATCTTGAAGCTCGAAATCATAAGCTTTCCGTTGGGATGCGATTCAAAATGAGGTTCGAGGGTGATGAAGTACCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCGTCTGTTTGGGCTGATTCTGAGTGGCGTTCATTAAAGGTTCAATGGGATGAACCGTCATCAATTCTGCGTCCAGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACCCCTCCTGCAAACGCCCAGCCAACCCAACGAAACAAGAGATCACGGCCTCCTGTTCTCCCTTCAACAATTCCCGATTCTTCTCTGCAAGGCATATGGAAGTCACCAATTGAATCGCCTTTCCCTTATCGTGACCCTCAACATGGACGAGACCTCTATCCATCACCAAGATTCAGCTCTACTGCGACCAGCTTTCTTGGTCTTGGTGGGAACAGCCCTGCTTCTAACAAGTCAACATATTGGTCAAGTAGATTGGAAAACTCTACTGAACCTTTTTTGCCTATAGCACTTAAAGAATCTGGGGAGAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAACAGTTCCTTTGTCAGGAAGGGTGGGTGATGATAGGTCTGTTCCGTCCTTGGATGCCGAGTCTGACCAACATTCTGAACCATCAAATGTTAACCGGTCTGATATTCCTTCAGTAAGCTGTGATGCTGACAAATCATGCCTGCGGTCTCCTCAGGAGTCCCAAAGCAGACAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTAGATTTAACACGTTTTGATGGATATGAAGATCTGCTTAGGAAATTGGAAGAGATGTTCGACATTGAGGGTGAACTCTGTGGGGCAACAAAAAAATGGCTGGTCGTTTACACTGACAATGAAGATGATAGGATGATGGTTGGGGATGATCCATGGCTCGAATTTTGTAGCGTTGTGAGGAAAATTTTCATCTACACACCAGATGAGGTTAAGAAGCTCTCACCCAAAATATGTCTTCCGACCAATGAAGAAGGTAAACCATGCAAGCTGGATTGCGAAGCTGTTGTCAATCCCGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 2013 0.4506 MASNHLSATISRAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQVTLLPETDQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNVPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANAQPTQRNKRSRPPVLPSTIPDSSLQGIWKSPIESPFPYRDPQHGRDLYPSPRFSSTATSFLGLGGNSPASNKSTYWSSRLENSTEPFLPIALKESGEKRQGTGNGCRLFGIQLLENSNAEESLQTVPLSGRVGDDRSVPSLDAESDQHSEPSNVNRSDIPSVSCDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIEGELCGATKKWLVVYTDNEDDRMMVGDDPWLEFCSVVRKIFIYTPDEVKKLSPKICLPTNEEGKPCKLDCEAVVNPEDQSSIVGPGC* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2764 670 MobiDBLite consensus disorder prediction 357 385 - -
Tpr2g2764 670 MobiDBLite consensus disorder prediction 360 385 - -
Tpr2g2764 670 Gene3D - 288 360 - -
Tpr2g2764 670 Pfam AUX/IAA family 543 636 IPR033389 -
Tpr2g2764 670 SUPERFAMILY DNA-binding pseudobarrel domain 114 254 IPR015300 -
Tpr2g2764 670 SUPERFAMILY CAD & PB1 domains 548 623 - -
Tpr2g2764 670 CDD B3_DNA 123 225 IPR003340 GO:0003677
Tpr2g2764 670 ProSiteProfiles PB1 domain profile. 546 639 IPR000270 GO:0005515
Tpr2g2764 670 SMART B3_2 125 227 IPR003340 GO:0003677
Tpr2g2764 670 MobiDBLite consensus disorder prediction 507 522 - -
Tpr2g2764 670 Pfam Auxin response factor 251 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr2g2764 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 632 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr2g2764 670 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Tpr2g2764 670 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Tpr2g2764 670 Gene3D - 541 635 - -
Tpr2g2764 670 Gene3D - 122 227 IPR015300 -
Tpr2g2764 670 PANTHER AUXIN RESPONSE FACTOR 1 17 632 - -
Tpr2g2764 670 MobiDBLite consensus disorder prediction 502 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2764 Tpr-Chr2 32173590 32180647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2764 2 664 B3 DNA Binding Superfamily AT1G59750 71.364 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr2g2764 AUX_IAA 3.5e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2764 K14486 - gmx:100819023 1207.2