Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2676 ATGCCAAAGTCTAAGAGAAACAAACAAGTTACACTTTCAAAGACAACGAAAAAAGGAAGAGGTCACAAAGAATTGATAGTGAATGCAATAAGAGATGCAGCTGAAAATTACAATTCAGTTTATGTGTTTTCTTTTGAGAATATGAGGAACCAGAAATTGAAAGAGTTTAGAGATCAACTACAAAAAAGTAGTAGGTTTTTTCTTGGATCCAATAAAGTAATGCAAGTTGCTCTTGGTCGTTCTCCTTCTGATGAAATCAAACCTAATCTTCATAAGGTTTCAAAGCTATTGCGTGGAAATGCTGGGATGGTTTTTACCAATCTTTCTAGAGAAGAAATTGAAAGGCTGTTTAATGAATTTGAGGGATACGACTTTGCAAGAACAGGAAGCATTGCCACTGAAAAGGTGGAACTCAAAGAGGGTCCTTTAGAGCATTTCACCCATGAGATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGAGTTGTTGAGCTTGTTTCTGACTATGTTGTTTGTGAGGAGGGAAAGCCTTTATCACCTGAAGCATCTCGCATACTGCGTTTGATGGGAGTCATGATGGCTACATTTCGACTGCACCTGGTTTGCAGATGGAGTTCTGATGATTTTGAACTCTTAATTGACGGGCCTGGTGATTCAGATGTTGAATGA 684 0.3889 MPKSKRNKQVTLSKTTKKGRGHKELIVNAIRDAAENYNSVYVFSFENMRNQKLKEFRDQLQKSSRFFLGSNKVMQVALGRSPSDEIKPNLHKVSKLLRGNAGMVFTNLSREEIERLFNEFEGYDFARTGSIATEKVELKEGPLEHFTHEMEPFLRKQGMPVRLNKGVVELVSDYVVCEEGKPLSPEASRILRLMGVMMATFRLHLVCRWSSDDFELLIDGPGDSDVE* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2676 227 CDD Ribosomal_P0_like 22 184 IPR033867 GO:0000027
Tpr2g2676 227 Gene3D - 125 198 IPR043164 -
Tpr2g2676 227 PANTHER RIBOSOME ASSEMBLY FACTOR MRT4 1 227 - -
Tpr2g2676 227 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 227 - -
Tpr2g2676 227 Gene3D - 30 212 IPR043141 -
Tpr2g2676 227 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
Tpr2g2676 227 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Tpr2g2676 227 Pfam Ribosomal protein L10 20 120 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2676 Tpr-Chr2 31574715 31577173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2676 35 213 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 21.229 4.30e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2676 K14815 - gmx:100305462 389.423