Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2651 ATGCAGTTTCAAATGTCTGATGCGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATGCATTTGAAAAGTATGGCAAGCTGCTTGAGGCAAAGGTGGTGGTTGACAAGTTCTCTGGACGTTCACGTGGTTTTGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGAATCGACTTGGATGGTCGAACTATTACTGTTGATAAAGCTCAGCCTCAAGGGTCAAGTAGAGATGATGACCGAGAACGTGGTCGTGACTCACGTGATCGCAATCGTGGCCGAGATTATGGAGGTAGTCGAGGGTCTAATGGTGGGGAATGCTTTAAGTGTGGTAAACCGGGTCATTTTGCAAGGGAATGTCCCAGTGAAGGAGGAGAAAGAGGAGGAAGGTATGGTGGCAGGGAAAGTAGATATAGTGGTGGCTATGGTCCTGATAGGAATGCAGATCGCTCTTCTGGTGGGCGTGACAGGGATGGTGGTGGTCGTGACAGGGATGGTGGTGGTCGCGACAGGGATGGTGGTCGCGATAGGGATGGTGGTGGACGTGACAGGGATCGTGATCGTGCTGCACCATATGAGCGTCGTGGATCTGGAGGCTATCGTTGA 657 0.4977 MQFQMSDADEFRCFIGGLAWSTSDRKLKDAFEKYGKLLEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGSSRDDDRERGRDSRDRNRGRDYGGSRGSNGGECFKCGKPGHFARECPSEGGERGGRYGGRESRYSGGYGPDRNADRSSGGRDRDGGGRDRDGGGRDRDGGRDRDGGGRDRDRDRAAPYERRGSGGYR* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2651 218 Gene3D - 2 119 IPR012677 -
Tpr2g2651 218 SUPERFAMILY Retrovirus zinc finger-like domains 116 141 IPR036875 GO:0003676|GO:0008270
Tpr2g2651 218 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 166 - -
Tpr2g2651 218 MobiDBLite consensus disorder prediction 136 150 - -
Tpr2g2651 218 Pfam Zinc knuckle 123 139 IPR001878 GO:0003676|GO:0008270
Tpr2g2651 218 PANTHER TRANSFORMER-2-RELATED 5 166 - -
Tpr2g2651 218 MobiDBLite consensus disorder prediction 90 113 - -
Tpr2g2651 218 MobiDBLite consensus disorder prediction 166 211 - -
Tpr2g2651 218 SMART c2hcfinal6 123 139 IPR001878 GO:0003676|GO:0008270
Tpr2g2651 218 SMART rrm1_1 12 85 IPR000504 GO:0003723
Tpr2g2651 218 ProSiteProfiles Zinc finger CCHC-type profile. 124 139 IPR001878 GO:0003676|GO:0008270
Tpr2g2651 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Tpr2g2651 218 SUPERFAMILY RNA-binding domain, RBD 4 121 IPR035979 GO:0003676
Tpr2g2651 218 MobiDBLite consensus disorder prediction 80 218 - -
Tpr2g2651 218 Gene3D - 120 176 - -
Tpr2g2651 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2651 Tpr-Chr2 31311503 31314255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2651 13 88 Eukaryotic Initiation Factors Gene Family AT4G34110 40.789 3.31e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2651 - - lang:109329957 250.751