Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2583 ATGATGGCCACCGCCGATGATCCAGAATACTGGACGCAACTGATGGCCACTTACCTCCTCCACCCCGAAACCGACCATTCCGATCAACTCCGCTCCATTTCATCTTCTCCCGATTTCAATCTTCATTTTCCTCTCTACATCGACTTCGCAGAATTGTTGGATTATGATCCTCGCATTGCTCATCTCATCTTTTCCCAATCCAATACCTATCTTCAACTATTCGATGAAGCTGCTCTTAGGACTCATAGAATTGTGTTAGGAGAAATGGCTGGTGATGAAAAGAATACTGTGGTTGAGAAAAAGTACATTCACGTTCGGATTAACATCAGTGGTTCTCCCCTTGAATGCCCTGAGACTTTTCCGAGCATAGGACGTGTACGGGTGCAGCACCGAGGGATTCTTCTCACTCTCAAAGGGATAGTAATCAGGTCCGGAGCTATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGCCACAAATGCAAAAACAGCTTCACAGTTCATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGTCCAATTCAGAAGCCGAAGCCCTGTGGGGGTACAAAATTCCAGTATGTAGAGAATACTATAGTGTGCCATGATTATCAGGAGATAAAAGTCCAAGAGAGCACACAGGTGCTAGGTGTTGGTGCGATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTTACTGGTCTCTTAACGGCAAGATGGTCTCCAGAGTTGAAGGATGTGCGCTGTGACCTTGATCCGGTATTAATAGCCAACAATGTAAGGAGAATCAATGAATTGAAGTCAGAAATTGATATTTCTGATGCCATCGTTATGAAATTCAAGCAGTTTTGGGATCACTTCAAAGACACACCTTTAAAAGGAAGGAATGCTATTCTACGAGGAATCTGCCCACAAATATTTGGTCTTTTCACGGTCAAGCTGGCAGTTGCATTAACACTAATCGGAGGTGTACAACATGTCGATGCTTCTGGAACAAGGGTAAGGGGGGAGTCCCACTTACTCTTGGTCGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGGTCTGTTATTACAACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCCGTGAAGGATGGGGGTGAGTGGATGTTGGAAGCTGGCGCCCTTGTCTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACACGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACCCTCAGTACCAAAACAACAGTATTTGGCGCCACAAATCCTAAGGGACATTATGATCCTGATCAACCTCTGTCTGTCAATACAACCCTCTCTGGTCCTTTGTTAAGCAGATTTGATATAGTCCTGGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACCGGATAGAACATCCAATGATGAAGATCTTGCAAATATCTGGCCTCTTTCTACACTCAAGAGGTATATACACTATTTGAAAGAAAAATTCAAACCAGTCCTTACGAGAGAGGCCGAAACAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTGATAATGCAGCTAGGACAACTGTCCGCATGCTTGAAAGTTTGATTCGCCTAGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAGGTTACTCGTCTAGATGCTGTCACAGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTCACCGACAACCCTGATCAGGAATATGCAAAGCAAGAAAGGTTGATCCTAGAAAAATTGGGATGCAATGACAACTTTTCTGATATGAATATGGAAGATTGA 2007 0.435 MMATADDPEYWTQLMATYLLHPETDHSDQLRSISSSPDFNLHFPLYIDFAELLDYDPRIAHLIFSQSNTYLQLFDEAALRTHRIVLGEMAGDEKNTVVEKKYIHVRINISGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCHKCKNSFTVHPEVEARNSISLPSICPIQKPKPCGGTKFQYVENTIVCHDYQEIKVQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTARWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDAIVMKFKQFWDHFKDTPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTSNDEDLANIWPLSTLKRYIHYLKEKFKPVLTREAETVISSYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAVTAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLGCNDNFSDMNMED* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2583 668 SUPERFAMILY Nucleic acid-binding proteins 42 262 IPR012340 -
Tpr2g2583 668 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 32 659 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr2g2583 668 Gene3D - 286 624 IPR027417 -
Tpr2g2583 668 SMART mcm 119 620 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr2g2583 668 ProSiteProfiles MCM family domain profile. 311 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr2g2583 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 628 IPR027417 -
Tpr2g2583 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 352 367 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr2g2583 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 410 424 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr2g2583 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 438 451 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr2g2583 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 488 496 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr2g2583 668 CDD MCM9 314 618 - -
Tpr2g2583 668 Gene3D - 126 254 IPR012340 -
Tpr2g2583 668 SMART AAA_5 353 502 IPR003593 -
Tpr2g2583 668 Pfam MCM OB domain 126 254 IPR033762 -
Tpr2g2583 668 Gene3D - 150 206 - -
Tpr2g2583 668 Pfam MCM P-loop domain 313 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr2g2583 668 Pfam MCM AAA-lid domain 537 618 IPR041562 -
Tpr2g2583 668 PANTHER DNA HELICASE MCM9 32 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2583 Tpr-Chr2 30691236 30703723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2583 26 643 Core DNA Replication Machinery Family AT2G14050 75.606 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2583 K10738 - gmx:100776255 1120.92