Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2574 ATGGGATCTCATCACAGAAAATTTCTCACAGAATTATGCAATTTAATATGTCATGGAAAGGAATCTCTATCAAATTGTTTACCAAACAACAAAGATTGCACCACCGTTTGCTTCAAAATTTGTCTTCCCAATCCTCAATACCCATTTTTCAATTATCCACCACCACCACCACAAAAACCACCACAAGTTCCTTCTTTTATCATATCAGATGAAAACAACAACAGCCACAAACTCACCAATTACTTCATCCTTACCCTTTCTCTTGTTGCTTTTGTTTTCTTTCTTGTTTGTATTCGTGCAATTTGTATCACTTTTAGGTCAAGAAGAAGAACAAGATTATTGGAAGTGACAAGAGCATCACCATCATCATCAACAACAATTCAACAAATTGATGAGAATTTTGATGAAAATCAACATGTTGTGGATCATCCAATCTGGTATATTCGAACCCTAGGTCTTAATCAATCTGTTATAAATGCAATTAGTGTTTGTAAGTATAAGAAAGGTGAAGGTTTGATTGATGGAACTGAATGTTCTGTTTGTTTGAGTGAATTTGAAGAAGATGAAAATCTTAGACTTTTACCTAAGTGTAATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGGTCACATACCAATTGTCCTATGTGTAGAGCTCCAATTGTTAATAGTAGTACCAACCCTCCAATTGATAGGGTAGAGTCTTTGGAGTCTGTTGTTGTTGATGATTTGAATTCAAGTTCATTGGAACATACACAAATTGAGGTTTTTGATGAAAATAGCGGTGATGGTGAAACCAATTTAGGGTTTGAAAGTTGTGATTTTGAATCGGAATCGAGGAATAGGGCGACGGCGGAGGAGGAAGGAGAAGGGCAATTGGGGGTATGTGAAAATGAAAGGCGAGTTGTCGATGCGGTTGGTGTTGTTCGGCCTAGGAGATCGGTTTCTATGGATGATTCTTTTGTTGCAAATATCAATAATGCTCTTGCAAATGTTGTATCAATCGAATCGAAAAGTAATGGTGAATCAAGTAGAGTGATTTTCAATGAAGATACTATTTCTAAGGTTAATGGAAATGAGAATTTGGCTACTACTTCCAAAGGTAGTAGTAGCTTTTCTTTTAGGCCAACAAGATATTTGCAGGGTGTTCCTAGTCCAATGAAGAGATCAAGTTCATACAATGGGAAATTTCTTCTGTCTTGGTATGGTCGCACTCAGAAGAAGCCAAATGCTATTCTGAGAAGCTTTTAA 1257 0.3636 MGSHHRKFLTELCNLICHGKESLSNCLPNNKDCTTVCFKICLPNPQYPFFNYPPPPPQKPPQVPSFIISDENNNSHKLTNYFILTLSLVAFVFFLVCIRAICITFRSRRRTRLLEVTRASPSSSTTIQQIDENFDENQHVVDHPIWYIRTLGLNQSVINAISVCKYKKGEGLIDGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVNSSTNPPIDRVESLESVVVDDLNSSSLEHTQIEVFDENSGDGETNLGFESCDFESESRNRATAEEEGEGQLGVCENERRVVDAVGVVRPRRSVSMDDSFVANINNALANVVSIESKSNGESSRVIFNEDTISKVNGNENLATTSKGSSSFSFRPTRYLQGVPSPMKRSSSYNGKFLLSWYGRTQKKPNAILRSF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2574 418 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 409 - -
Tpr2g2574 418 Pfam Ring finger domain 177 220 IPR001841 -
Tpr2g2574 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 228 IPR013083 -
Tpr2g2574 418 SMART ring_2 178 219 IPR001841 -
Tpr2g2574 418 SUPERFAMILY RING/U-box 172 232 - -
Tpr2g2574 418 CDD RING-H2_PA-TM-RING 177 220 - -
Tpr2g2574 418 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Tpr2g2574 418 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 409 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2574 Tpr-Chr2 30597223 30598791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2574 140 243 C3H Transcription Factor Family AT4G33565 67.308 1.11e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2574 - - lja:Lj6g3v2193690.1 348.206