Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2556 ATGCTCATGGTTTTGCACTCAAAACACCTGCTGTTTCTGGTGGTTGTTACGGTCTTTTTATCAAAAGTAGCATCTCAGTTACTATCTCTGCCTAACTGCCCAACAAAGTGTGGCTCTGTCACCATTCCATTCCCATTTGGAACCACCAAGGGTTGTTCCTTGGACAACACCTTTCTCATCAATTGCAACAAAACATCTACATCTTCAACCTCGACACATGTACCCTACTTGCCACATAGTAAGAGAATTGTCTTAAACATCTCACTCGACGGCGAACTGCATGTTGCATGGCCAGTAGCCAGAGATTGCTACGCTGAAAACAGCAAACTTGTGAACCAAACATATGGGACTGTCAACACAGCACATTTCCACATCTCGTCAACTCGAAACAAATTCATCGCAGTTGGCTGTGACACGTCTGGAGGACTCGTAGCATATGATTCTGGGGGAAACAATTACACCGCAGCATGTGTGGCTCTGTGCAACAAGCTTAATGATATTGTGGCCCATGAATCTTGCTCTGGCACTGGTTGTTGCGAGATTCCAATACCCCAAGGTCATGTGTTAATGAAAGTAATATATCTTTCTTTAGGCGTATTCAACAATCACTCAGCAGTGCATGACTTCAATCCATGTGGTTATGCTTTTTTGGTTGAAAATGGAGCCTACAAGTTCAAATCCACAGACCTCCTCAAGTTGGAGAAGGAGGAGTTTCCTGTGATGTTCGACTGGGCAGTAGGGAACCAAACGTGCCAGGAAGCTCGGAAGAATCTTTCAAATTATGCCTGTAAGGACAATAAAAGTACATGTTACAACTCAACTGAGAGATCTGGTTACCTTTGCAGATGCTTTCATGGATATCGGGGAAATCCTTACCTCATTCATGGTTGCCAAGATATTAATGAATGCAAGGAGTCCAATGACTGTGTTGAGGGGGCAACATGCATCAATCTTCCTGGAAGCTACGATTGTTTATGTCCAGCGGAATATGAGGGAAACGGGAAGATGAATGGAACAAGATGCAGCCCAAAATCGAACACCAAATCAAGGAAAGAGATCATATTGATAATAGGATTGAGTGTCAGTGCAAGCCTTGTAGCCCTAGTGGTAGGAAGCTTTTATGCATATTTGGCATTGAAGAAAAGAAAGCTCATTAAACTTAAAGAACAATATTTTCAACGAAATGGTGGCTTACTGTTACAACAAAAGATTGTGAGGCATGGAGGGTCAACTGAAACAGCTAAAGTCTTCACTGTTGAGGAGCTAAATGAAGCAACCAACAATTTTGACGAAGGCAAAATCCTAGGCCAAGGTGGTCAAGGAACAGTTTACAAAGGAGTTTTACAAGATAAAAGAATTGTAGCAATAAAGAAGTCCAAAATCAGTGACCCAAAACAGATTGAGCCGTTCATCAATGAAGTGATCGTGCTTTCTCAAATCAACCATAGAAATGTAGTAAAGCTTTTAGGTTGTTGTTTAGAGACAGAAGTTCCCTTACTTGTTTATGAATTCATTTCAAACGGTACTGTTTATGAGCATCTTCATGATCAAAACCAAACTTTAAAGCTTACATGGAAAACAAGATTGAGAATAGCAAAAGAAACTGCTGGAGTCCTCGCATACTTGCATTCTGCTGCATCTACTCCAATCATACATAGAGATGTGAAATCTACCAATATTCTCCTAGATCACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCTAGGATTCTTCCTCTTGATCATAGTCAGATAACCACCCTAGTGCAGGGTACATTGGGGTATCTTGACCCAGAATATTTCCACACAAGCCAGTTAACAGAGAAGAGTGACGTCTATAGCTTTGGGGTTGTCCTAGCAGAGCTACTGACGGGAAAGAAGGCACTGTCTTTTAGCAGGCCAGAGGAAGATAGGAACCTTGCATTGTACTTTGTTTCTTCAATGAAAGAGGGTCGGTTACATCATATTTTGGACACAAATATAGATGAGGCGAATATTGAGCAACTAAAGGAAGTTGCCTTTATTGCAGAAAGATGTTTAAGGTTGAAGGGTGAGGAAAGACCCACAATGAAAGAAGTGGCAATGGAATTAGAGGGAATATTAGTTTTTGAAGAGCACCGTTGGGGCAGTGGCAATTTGTTTTCAGAAGAGACTGATAACTTGCTAAGAGCAGCGTCGTCGTTTATCAATGTTGAAAACGGCGTTTATGGAAGTGGCACTAATTGTTCTGACTCATATAGCATAAACCAGATGTCAATGTCAACGTTTGGTGGAAGATAA 2283 0.4135 MLMVLHSKHLLFLVVVTVFLSKVASQLLSLPNCPTKCGSVTIPFPFGTTKGCSLDNTFLINCNKTSTSSTSTHVPYLPHSKRIVLNISLDGELHVAWPVARDCYAENSKLVNQTYGTVNTAHFHISSTRNKFIAVGCDTSGGLVAYDSGGNNYTAACVALCNKLNDIVAHESCSGTGCCEIPIPQGHVLMKVIYLSLGVFNNHSAVHDFNPCGYAFLVENGAYKFKSTDLLKLEKEEFPVMFDWAVGNQTCQEARKNLSNYACKDNKSTCYNSTERSGYLCRCFHGYRGNPYLIHGCQDINECKESNDCVEGATCINLPGSYDCLCPAEYEGNGKMNGTRCSPKSNTKSRKEIILIIGLSVSASLVALVVGSFYAYLALKKRKLIKLKEQYFQRNGGLLLQQKIVRHGGSTETAKVFTVEELNEATNNFDEGKILGQGGQGTVYKGVLQDKRIVAIKKSKISDPKQIEPFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFISNGTVYEHLHDQNQTLKLTWKTRLRIAKETAGVLAYLHSAASTPIIHRDVKSTNILLDHNLTAKVSDFGASRILPLDHSQITTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFSRPEEDRNLALYFVSSMKEGRLHHILDTNIDEANIEQLKEVAFIAERCLRLKGEERPTMKEVAMELEGILVFEEHRWGSGNLFSEETDNLLRAASSFINVENGVYGSGTNCSDSYSINQMSMSTFGGR* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2556 760 Pfam Wall-associated receptor kinase galacturonan-binding 33 91 IPR025287 GO:0030247
Tpr2g2556 760 Gene3D Transferase(Phosphotransferase) domain 1 505 710 - -
Tpr2g2556 760 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 734 IPR045274 GO:0007166
Tpr2g2556 760 CDD STKc_IRAK 435 701 - -
Tpr2g2556 760 ProSiteProfiles EGF-like domain profile. 299 342 IPR000742 -
Tpr2g2556 760 SMART egfca_6 299 342 IPR001881 GO:0005509
Tpr2g2556 760 ProSiteProfiles Protein kinase domain profile. 429 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g2556 760 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 315 326 IPR000152 -
Tpr2g2556 760 ProSitePatterns Calcium-binding EGF-like domain signature. 299 324 IPR018097 GO:0005509
Tpr2g2556 760 Pfam Calcium-binding EGF domain 299 341 IPR001881 GO:0005509
Tpr2g2556 760 Gene3D Phosphorylase Kinase; domain 1 398 504 - -
Tpr2g2556 760 Pfam Protein kinase domain 430 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g2556 760 SUPERFAMILY Growth factor receptor domain 246 331 IPR009030 -
Tpr2g2556 760 SMART serkin_6 429 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g2556 760 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 19 734 - -
Tpr2g2556 760 SMART egf_5 250 298 IPR000742 -
Tpr2g2556 760 SMART egf_5 302 342 IPR000742 -
Tpr2g2556 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Tpr2g2556 760 CDD EGF_CA 299 332 - -
Tpr2g2556 760 SUPERFAMILY Protein kinase-like (PK-like) 412 698 IPR011009 -
Tpr2g2556 760 Gene3D Laminin 248 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2556 Tpr-Chr2 30416483 30420396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2556 9 723 Receptor kinase-like Gene Family AT1G21230 45.964 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tpr2g2556 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2556 - - mtr:MTR_3g088780 1012.68