Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2522 ATGAGTTCTCACATGGAGATTTCATCAACCAGAGGCTTACCTGAATTGGGACTAATAGAGGATCCTAACTTTCTCCATCACTGGAATAATCACTTAAATTCTATCGATACGAATAACTTAACTGCTTCTGCTTTTGGAGATGCTTTACAAAAACATTTTTTGTCAAATAATCCAAATTTCAACAACAAAACATATTGCATGGAAACTTCACCTACCGGAAGCGAAAGACCGGTGAAACAGCTTAAAAATAACAGCTGGAATTACAATAGTCCTCAAACATCAGAGACACAATATGCTAATTCTTGCTCCAATAATCTTCTTTCATTTGCTGATTCGAATTATGAAAATCAATTGGGAATGTTGAAGCCTAAGTCTGAGATGGTTTGTCCTAAAATCGATAACAATAGTACTCTTGCAAACATGTTTGGGAATCAAAACCATGTCTTCAAAGCTTTTCAAGAGGCGAAAGATATTGAGACCACTCGTCCTAATAAACTTTCTCAAGCTCATGATCACATAGTAGCTGAAAGGAAGCGCCGCGAGAAGCTAAGCCAGCGATTCATTGCTCTATCTGCTCTTGTTCCAAACCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTGAAGCAAATGGAAGAGAAAGTGAGTGTTCTTGAGGAGGAAAAGAAAAGGAAGAAAAGTGTGGAATCTGTTGTAATAGTGAAGAAATCTCAACTTTCTACTACTAATGATGCTGACTCTTCTGATAATACTACATTTGATGATACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTCCTCATAAGATTACACTGTCTTAAGAGTCAAGGAGTTATAGAGAAAACAATAAGTGAAATTGAGAAACTTCATCTAAAAGTTATCAATAGTAGTGCCTTAACATTTGGGAATTTCACTCTTGATATAACCATTATTGCTCAGATGGATGTGGGATTTTGCATGACACTTAAGGATCTTGTGAGAAAGCTACGATCAGAATATTCATCTTTCATGTGA 1038 0.3603 MSSHMEISSTRGLPELGLIEDPNFLHHWNNHLNSIDTNNLTASAFGDALQKHFLSNNPNFNNKTYCMETSPTGSERPVKQLKNNSWNYNSPQTSETQYANSCSNNLLSFADSNYENQLGMLKPKSEMVCPKIDNNSTLANMFGNQNHVFKAFQEAKDIETTRPNKLSQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVSVLEEEKKRKKSVESVVIVKKSQLSTTNDADSSDNTTFDDTLPEIEARFCERSVLIRLHCLKSQGVIEKTISEIEKLHLKVINSSALTFGNFTLDITIIAQMDVGFCMTLKDLVRKLRSEYSSFM* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2522 345 Pfam Helix-loop-helix DNA-binding domain 172 217 IPR011598 GO:0046983
Tpr2g2522 345 SMART finulus 173 222 IPR011598 GO:0046983
Tpr2g2522 345 PANTHER BHLH TRANSCRIPTION FACTOR 6 344 - -
Tpr2g2522 345 CDD bHLH_AtNAI1_like 167 242 - -
Tpr2g2522 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 230 IPR036638 GO:0046983
Tpr2g2522 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Tpr2g2522 345 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 6 344 - -
Tpr2g2522 345 Gene3D - 164 239 IPR036638 GO:0046983
Tpr2g2522 345 Coils Coil 206 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2522 Tpr-Chr2 30083962 30087045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2522 167 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 54.098 2.96e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g2522 HLH 8.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2522 - - gmx:100798018 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1732 3 15347941 15350029 Tpr2g2522 2 30083962 30087045 PCT