Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2471 ATGTACCGGGAAAAAGTGCATATACCTATTGAAAAGCCATGCATTATTTTAAAAGGATCGGGTAGCAATACAACAATCATTGCTTACAATGATTCGGCTAATAATGTTGGCACATCTGATAGCGCTACATTCATTTCATCTCCACCTAACGTGGTTGTGAGTGGAATTTCATTCAAGAATACATATGGATCTAACGGACCTGCAGTAGCAGCTAACTTTTATGGTGATAAATCAGCCATATTTGAATGTAGTTTCTTTGGCTACCAAGATACATTGCTCATATCATCAGGACGCTCTTACTTTAAAAATTGCTTTATTCAAGGTGAAGTGGACTTTATTTGTGGAGAGGGTCAATCTTATTTTGAGAATTGTGTCATTAATGCTGTACAAGAGAAATCCAAATCTATAGGTTTTGTTACGGCGCAACTTAGAGAAAAACCAAATGACCCAAACGGATTTGTTTTTAAAGGAGGGTCTATTATTGGAATTGGTCAAGTAAATCTTGGAAGACCTTGGGGCCCTTACTCAAGAGTCATATTTTGGGAAACATATTTTTCATCTGTAATAACACCTGAAGGATGGAACCTTTGGCATGTAAGAGGCGACCAAAAGGAATCAACATATATCCCATGGCATTCACTGTTTCGATCTATGTTTTAA 660 0.3697 MYREKVHIPIEKPCIILKGSGSNTTIIAYNDSANNVGTSDSATFISSPPNVVVSGISFKNTYGSNGPAVAANFYGDKSAIFECSFFGYQDTLLISSGRSYFKNCFIQGEVDFICGEGQSYFENCVINAVQEKSKSIGFVTAQLREKPNDPNGFVFKGGSIIGIGQVNLGRPWGPYSRVIFWETYFSSVITPEGWNLWHVRGDQKESTYIPWHSLFRSMF* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2471 219 Pfam Pectinesterase 1 200 IPR000070 GO:0030599|GO:0042545
Tpr2g2471 219 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 208 - -
Tpr2g2471 219 Gene3D - 1 213 IPR012334 -
Tpr2g2471 219 SUPERFAMILY Pectin lyase-like 2 202 IPR011050 -
Tpr2g2471 219 PANTHER PECTINESTERASE 1 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2471 Tpr-Chr2 29686632 29688624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2471 1 203 Carbohydrate Esterase AT2G19150 44.811 1.25e-53 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2471 - - mtr:MTR_5g088290 258.455