Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2464 ATGGAGGAAATAACGATCGACATTGAAGGAGAGTCTTCAAATTCAAAAGACACGCTGTTTGTTTGTGAAATCTGCACGAACACTAAAACAATGAGCGATGCTTTCTACATCAGCGGTTGTCATCATGCTTATTGCTCCGATTGCGTAGCCATGTACATCGGTTCCAAACTTGAAGAAAACATCACAAACATTGTGTGTCCTATTCCCGGGTGCAGTGGTTCGTTAGAAGTGGACTTTTGCCGTTCGATTCTTCCAGCTGAGGTTTTTGAACGGTGGGGTAACGCGTTGTGTGAGACTTCAATTGATGTATCGGAGAAATTCTATTGTCCTTTTAAAGACTGTTTTGCTCTTTTGATCAACGACGGAACAAAGACCGATAAAAATTCTGAATGTCCTAATTGTAATAGGATGTTGTGTGCGCATTGTAAGGTTCCATGGCATGAAGGAATCAAATGCAACGAGTTCCAAAAGTTGAACGCCGACGAGAGGGGGAGAGAAGATGTTATGTTGATGAAACTTGCGAAGAAAAATAAGTGGAGGCCATGTCCCAAATGCAGATTTTATGTTGCTAAATCTGAGGGTTGCAACAACATGACATGCAGGTGTGGTTGTAGTTTTTGTTACAAATGTGGAGGTGCCTTCGTTGCCGACAGATGCAACTGTAATTTGGGTCAAGATCTCTCCGCTGTTGAAAAATTCTTTTCTTTATTAATCATATTGTTATACATGGTTCTCTATATTATATGGCCATACATATTCAAATAA 765 0.4026 MEEITIDIEGESSNSKDTLFVCEICTNTKTMSDAFYISGCHHAYCSDCVAMYIGSKLEENITNIVCPIPGCSGSLEVDFCRSILPAEVFERWGNALCETSIDVSEKFYCPFKDCFALLINDGTKTDKNSECPNCNRMLCAHCKVPWHEGIKCNEFQKLNADERGREDVMLMKLAKKNKWRPCPKCRFYVAKSEGCNNMTCRCGCSFCYKCGGAFVADRCNCNLGQDLSAVEKFFSLLIILLYMVLYIIWPYIFK* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2464 254 Pfam IBR domain, a half RING-finger domain 96 152 IPR002867 -
Tpr2g2464 254 Pfam IBR domain, a half RING-finger domain 173 214 IPR002867 -
Tpr2g2464 254 SMART ibrneu5 162 221 IPR002867 -
Tpr2g2464 254 SMART ibrneu5 90 152 IPR002867 -
Tpr2g2464 254 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 219 IPR031127 GO:0004842|GO:0016567
Tpr2g2464 254 ProSitePatterns Zinc finger RING-type signature. 40 49 IPR017907 -
Tpr2g2464 254 ProSiteProfiles Zinc finger RING-type profile. 22 68 IPR001841 -
Tpr2g2464 254 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 219 - -
Tpr2g2464 254 SUPERFAMILY RING/U-box 17 101 - -
Tpr2g2464 254 SUPERFAMILY RING/U-box 163 222 - -
Tpr2g2464 254 ProSiteProfiles TRIAD supradomain profile. 18 231 IPR044066 -
Tpr2g2464 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 105 IPR013083 -
Tpr2g2464 254 SUPERFAMILY RING/U-box 104 157 - -
Tpr2g2464 254 Gene3D - 149 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2464 Tpr-Chr2 29640394 29642660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2464 22 212 C3H Transcription Factor Family AT2G19610 30.348 2.28e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2464 K11975 - gmx:100803898 295.049