Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2454 ATGGAGGACAACCCTAGTTCATCAAGAGTTGACAGAAAAACCATTGAGAAGATTAGAAGAATTCAAATGAAAGATCTCTGCAACAAGGTCTACTCACTTCTGCCTCATCAAACTTCAAAGGAAGCTATTTCAACGCTGGATAAGGTAGAGGAAGCAACAAAATACATAAAGAAATTACAGATCAACTTAGAGAAAATGAAGGAGAAGAAGAATTTTCTACTAGGAATTCAAAGGTCAACAAATGTGGATATGGATAGAAGCAAGAACTTGGGATTCAAATCTCCAAAAATTGAGATCCAACAATTTGATTTAGTCTTAGAGGTTGTTCTAATAACATGTTTGGATTCTCACTTTTTGTTCAATGAAACTATTCGTGTTCTTCAAGAAGAAGGAGTTGATATTGTTAATGCTAGTTATAAAGTCAATGAAGATTCTGTTTTCCATTCAATACATTGCCAGGTAGGAGAATTTGGTAATGAAGTTGCAAGGATATCTGAGAAATTGTACTAA 510 0.3392 MEDNPSSSRVDRKTIEKIRRIQMKDLCNKVYSLLPHQTSKEAISTLDKVEEATKYIKKLQINLEKMKEKKNFLLGIQRSTNVDMDRSKNLGFKSPKIEIQQFDLVLEVVLITCLDSHFLFNETIRVLQEEGVDIVNASYKVNEDSVFHSIHCQVGEFGNEVARISEKLY* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2454 169 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Tpr2g2454 169 PANTHER TRANSCRIPTION FACTOR BHLH162 1 168 - -
Tpr2g2454 169 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Tpr2g2454 169 Gene3D - 1 89 IPR036638 GO:0046983
Tpr2g2454 169 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 73 IPR036638 GO:0046983
Tpr2g2454 169 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 168 IPR015660 GO:0003700|GO:0006357
Tpr2g2454 169 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2454 Tpr-Chr2 29550675 29551792 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2454 7 168 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.618 2.96e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g2454 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2454 - - gmx:100784418 206.068