Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2440 ATGGCACTTCAGCATTGTTTTTCACATGAATCGAAAACCATTCCAAATTCCATGTCAGAAGCAGAAAATTCCAATGGTTGTTTTGATTGCAACATTTGTTTAGACTTTGCGCACGAACCGGTAGTCACTCTTTGTGGCCACCTTTACTGCTGGCATTGCATCTACAAGTGGCTCCATGTACAGAGTGATGATTCTCTTGGAGTCGACGAACACCCACAATGCCCTGTATGCAAAGATGATATATCACATACCACAATGATCCCATTGTATGGCCGCGGCGGCCATGCTCCACCGAGTGCGAAATCATCACATTGTGATGATAGTTTTATACCACCAAGACCAACTGCTTCAGGTGCTCAAGCTCTTTTGGCAAAAGTATCTCAAAGCGAACAGCAGCAACAACTTCCATATCGTAATCCTTACCGGGGTCAATATTTAAACTCTTCTTTGTACCAACAAGAGGATGATGCCACATCACAAATGCTCAACCTTGGTGCCTCCATGACCTCAGGATCTCACCACCATCCTTTGGTTGGGATGTTTGGGGAGATGGTTTTTGCTGGAGTGTTTGGCAACTCGCCGAATTCTTATCAGCAGGCAGGAAGTAATAGCTCTAGATTAAGAAGGGAAGAGTTGCAGACTGATAAATTTTTGAACAGAATTACAAATTTTCTGTTTTGCTGCTTTATTCTGTGTCTTATTGTCTTCTGA 711 0.4304 MALQHCFSHESKTIPNSMSEAENSNGCFDCNICLDFAHEPVVTLCGHLYCWHCIYKWLHVQSDDSLGVDEHPQCPVCKDDISHTTMIPLYGRGGHAPPSAKSSHCDDSFIPPRPTASGAQALLAKVSQSEQQQQLPYRNPYRGQYLNSSLYQQEDDATSQMLNLGASMTSGSHHHPLVGMFGEMVFAGVFGNSPNSYQQAGSNSSRLRREELQTDKFLNRITNFLFCCFILCLIVF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2440 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tpr2g2440 236 CDD RING-HC_AtRMA_like 28 78 - -
Tpr2g2440 236 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Tpr2g2440 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 142 IPR013083 -
Tpr2g2440 236 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 IPR018957 GO:0046872
Tpr2g2440 236 ProSiteProfiles Zinc finger RING-type profile. 30 78 IPR001841 -
Tpr2g2440 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 236 - -
Tpr2g2440 236 SMART ring_2 30 77 IPR001841 -
Tpr2g2440 236 SUPERFAMILY RING/U-box 26 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2440 Tpr-Chr2 29331668 29333602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2440 23 222 C3H Transcription Factor Family AT4G27470 40.686 1.12e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2440 K10666 - gmx:100816864 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1905 3 17222559 17224483 Tpr2g2440 2 29331668 29333602 PCT