Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g2440 | ATGGCACTTCAGCATTGTTTTTCACATGAATCGAAAACCATTCCAAATTCCATGTCAGAAGCAGAAAATTCCAATGGTTGTTTTGATTGCAACATTTGTTTAGACTTTGCGCACGAACCGGTAGTCACTCTTTGTGGCCACCTTTACTGCTGGCATTGCATCTACAAGTGGCTCCATGTACAGAGTGATGATTCTCTTGGAGTCGACGAACACCCACAATGCCCTGTATGCAAAGATGATATATCACATACCACAATGATCCCATTGTATGGCCGCGGCGGCCATGCTCCACCGAGTGCGAAATCATCACATTGTGATGATAGTTTTATACCACCAAGACCAACTGCTTCAGGTGCTCAAGCTCTTTTGGCAAAAGTATCTCAAAGCGAACAGCAGCAACAACTTCCATATCGTAATCCTTACCGGGGTCAATATTTAAACTCTTCTTTGTACCAACAAGAGGATGATGCCACATCACAAATGCTCAACCTTGGTGCCTCCATGACCTCAGGATCTCACCACCATCCTTTGGTTGGGATGTTTGGGGAGATGGTTTTTGCTGGAGTGTTTGGCAACTCGCCGAATTCTTATCAGCAGGCAGGAAGTAATAGCTCTAGATTAAGAAGGGAAGAGTTGCAGACTGATAAATTTTTGAACAGAATTACAAATTTTCTGTTTTGCTGCTTTATTCTGTGTCTTATTGTCTTCTGA | 711 | 0.4304 | MALQHCFSHESKTIPNSMSEAENSNGCFDCNICLDFAHEPVVTLCGHLYCWHCIYKWLHVQSDDSLGVDEHPQCPVCKDDISHTTMIPLYGRGGHAPPSAKSSHCDDSFIPPRPTASGAQALLAKVSQSEQQQQLPYRNPYRGQYLNSSLYQQEDDATSQMLNLGASMTSGSHHHPLVGMFGEMVFAGVFGNSPNSYQQAGSNSSRLRREELQTDKFLNRITNFLFCCFILCLIVF* | 237 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g2440 | 236 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 2 | 236 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Tpr2g2440 | 236 | CDD | RING-HC_AtRMA_like | 28 | 78 | - | - | |
Tpr2g2440 | 236 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - | |
Tpr2g2440 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 142 | IPR013083 | - | |
Tpr2g2440 | 236 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 77 | IPR018957 | GO:0046872 | |
Tpr2g2440 | 236 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 78 | IPR001841 | - | |
Tpr2g2440 | 236 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA3 | 2 | 236 | - | - | |
Tpr2g2440 | 236 | SMART | ring_2 | 30 | 77 | IPR001841 | - | |
Tpr2g2440 | 236 | SUPERFAMILY | RING/U-box | 26 | 90 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g2440 | Tpr-Chr2 | 29331668 | 29333602 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g2440 | 23 | 222 | C3H Transcription Factor Family | AT4G27470 | 40.686 | 1.12e-43 | 145 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g2440 | K10666 | - | gmx:100816864 | 333.569 |