Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2426 ATGAGGTGTGGTTGCTTTAGAAGATTATCTATAAAGAAGGAAAAACGTCCTAATAATTATATTTCTAGTGAAATTGAAGGTTATCCTTTGGATAATATTAGGAATTTTTCTGATAAAGAATTGTGTTTGGCAACTGATAATTATCATTTAAGGAATAAGATAGGAAGAGGAGGTTTTGGAACTGTTTTTCAGGGAACATTAAAAGATGGAAGAAAGATAGCAGTGAAGCCACTTTCTGTTGGATCAAAGCAAGGAGTTCGCGAATTTTTAACCGAAATTAATACCTTATCATACGTTAAACACGAAAACCTTGTTGAATTGGTTGGATTTTGCGTTCAAGGACCTAATCGTACGGTCGTCTATGAGTATGTCGAAAATGGAAACCTTCATACTGCATTACTTGGTAACAAGAAATCAAATATCAAACTAGAGTGGAGAAAACGATCTGCTATTTGCGTCGGTACTGCTAAAGGTCTTGCATATCTTCATGAAGAACTTGCACAACATATTGTACATAGAGACATCAAAGCTAGTAATGTATTACTTGATAAAGACTTCAATCCCAAAATAGGTGATTTTGGTATGGCCAAATTATTTCCAGATGATATCACTCACATCAGCACAAGAATCGCAGGAACAACTGGTTACTTAGCACCAGAATATGCATTAGGTGGACAATTAACTAAGAAAGCTGATGTATACAGCTTTGGAGTTCTTATACTTGAAATAATAAGTGGCAAAAGCAGCTCAAGGACAAATTGGGAAGGATCACAAAAATCTCTCTTAGAATGGGCATGGCATCTTCATGAAGAGGAGAAATGGTTGGAGCTAGTAGATCAAGACATGGAAGAATTTTCTGAGAAAGAAGTAATCAAGTACATTAAGGTTGCTCTTTTCTGCACACAAGCAGCAGCAAAAAGAAGGCCATTGATGACTCAGGTGGTTGATATGCTAACTAAGGATATTCAGCTCAATGAGAAGCAGCTAACAGCACCAGGATTGTTCAATACGAATGTTGGAGAATCGTCTCAAAAGAAATCAAACCCCGAATCTTTAGTTTATCACACTAGTTCTACTGAGGCTCTGGCTAGTATTACCGAGGTCACAGCCAGGTGA 1116 0.3701 MRCGCFRRLSIKKEKRPNNYISSEIEGYPLDNIRNFSDKELCLATDNYHLRNKIGRGGFGTVFQGTLKDGRKIAVKPLSVGSKQGVREFLTEINTLSYVKHENLVELVGFCVQGPNRTVVYEYVENGNLHTALLGNKKSNIKLEWRKRSAICVGTAKGLAYLHEELAQHIVHRDIKASNVLLDKDFNPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGVLILEIISGKSSSRTNWEGSQKSLLEWAWHLHEEEKWLELVDQDMEEFSEKEVIKYIKVALFCTQAAAKRRPLMTQVVDMLTKDIQLNEKQLTAPGLFNTNVGESSQKKSNPESLVYHTSSTEALASITEVTAR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2426 371 CDD STKc_IRAK 54 320 - -
Tpr2g2426 371 PIRSF TyrPK_CSF1-R 38 151 - -
Tpr2g2426 371 PIRSF TyrPK_CSF1-R 138 250 - -
Tpr2g2426 371 PIRSF TyrPK_CSF1-R 281 369 - -
Tpr2g2426 371 ProSiteProfiles Protein kinase domain profile. 48 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g2426 371 SMART serkin_6 48 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g2426 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Tpr2g2426 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 359 - -
Tpr2g2426 371 Gene3D Transferase(Phosphotransferase) domain 1 124 334 - -
Tpr2g2426 371 Gene3D Phosphorylase Kinase; domain 1 20 123 - -
Tpr2g2426 371 PANTHER - 1 359 - -
Tpr2g2426 371 Pfam Protein tyrosine and serine/threonine kinase 49 318 IPR001245 GO:0004672|GO:0006468
Tpr2g2426 371 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Tpr2g2426 371 SUPERFAMILY Protein kinase-like (PK-like) 22 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2426 Tpr-Chr2 29200564 29203805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2426 9 333 Receptor kinase-like Gene Family AT1G56120 48.632 3.11e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr2g2426 PK_Tyr_Ser-Thr 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2426 - - mtr:MTR_2g013210 635.565