Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2422 ATGTCTGACATCGAAAATCACGCAAATCATGCTGCTTCTTCCCCCGATAAGCCAAGTTCCAGGGGATCTGGTCATGAGAGCACGAGGATGAGAAGGAGAGACGGAGACAGGAAAAGTTTTCATGACCACCGTGACCGTCATAGAGATGATAAGTATGAAGGAAGAGGCAAATATGACAGTTATAATCGTCAACGTGGCCGTGATTATGATAGGCATAATGACTATGATCGAGACAGAGATACAAGGAGCAGATATGGAGCACATTCAAAGAGATCCAGGAGGGAATCTAGATCTAGATCACGGTCCAGATCCCCTTCTCAATCTGAAAGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTGCTACGGGTGTAACTCCCACCGTTTCAGGGCAAATGCCGGGGATTGCTCATATGATTCAAGGAGCTACACAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCACGCTCGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTTACTAACGAGCAGACAATTGCATCTTTCTTTAGCCATGTCATGCTTGCTATTGGTGGAAATTCTGCTGGAACAGGTGACTCGGTTGTCAATGTGTACATTAATCACGAGAAGAAATTCGCGTTTGTGGAGATGAGAACCGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTGCTGTGAGGGTTCGCAGGCCAACTGACTATAACCCTTCGTTAGCTGCAACTCTAGGTCCTTGCCAGCCAAGTTCAAACCTTAACTTGTCTGCCGTTGGACTTACTGCAGGTACAATTGGTGGAGCCGAGGGACTTGATCGCATATTTGTGGGTGGGCTGCCATACTACTTTACTGAAGTACAAATGAGAGAATTGCTTCAAGCTTTTGGCCCTCTCCGGAATTTTGATATAGTTAGAGATAAAGACACGGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCAGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGAGATAAAACATTGACAGTAAGGCGTGCTACTGTCAGTGGACATTCTAAACCAGAAGAGGATAACATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTGGTTGGGCTAAATATTCCAGGAGTCGAAAGAATCCCAACAAGTGAAGAAAGCCCCACTAAAGTTTTATGTTTAACTGAGGCCGTCACTACTGAACAATTAACTGATAATGGAGAATATGAAGAAATATTGGAAGACATGCGAGATGAATGCCGGAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGTCCAAATCCAAACGGAGAGCTGTCTACGGGTATTGGAAAGGTGTTCTTGGAATACTCTGACTGTACTGCTTCTTTGGCTGCAAAAAATGCTCTACATGGTAGAAAATTTGGGGGAAATACTGTGACTGCTGTTTATTATCCAGAAGAAAAATATCATAGTATGGAGTATGATTTATAA 1569 0.4359 MSDIENHANHAASSPDKPSSRGSGHESTRMRRRDGDRKSFHDHRDRHRDDKYEGRGKYDSYNRQRGRDYDRHNDYDRDRDTRSRYGAHSKRSRRESRSRSRSRSPSQSESKRTSGFDMAPPATGVTPTVSGQMPGIAHMIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFTNEQTIASFFSHVMLAIGGNSAGTGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAATLGPCQPSSNLNLSAVGLTAGTIGGAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRNFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPGVERIPTSEESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLMNVVIPRPNPNGELSTGIGKVFLEYSDCTASLAAKNALHGRKFGGNTVTAVYYPEEKYHSMEYDL* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2422 522 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 21 520 IPR006529 GO:0003723|GO:0005634|GO:0006397
Tpr2g2422 522 Gene3D - 416 521 IPR012677 -
Tpr2g2422 522 CDD RRM3_U2AF65 420 508 - -
Tpr2g2422 522 SUPERFAMILY RNA-binding domain, RBD 74 255 IPR035979 GO:0003676
Tpr2g2422 522 SMART rrm1_1 296 369 IPR000504 GO:0003723
Tpr2g2422 522 SMART rrm1_1 176 254 IPR000504 GO:0003723
Tpr2g2422 522 Gene3D - 170 270 IPR012677 -
Tpr2g2422 522 MobiDBLite consensus disorder prediction 22 85 - -
Tpr2g2422 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 366 IPR000504 GO:0003723
Tpr2g2422 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 258 IPR000504 GO:0003723
Tpr2g2422 522 PANTHER RNA-BINDING PROTEIN 1 521 - -
Tpr2g2422 522 MobiDBLite consensus disorder prediction 1 21 - -
Tpr2g2422 522 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 1 521 - -
Tpr2g2422 522 Gene3D - 289 391 IPR012677 -
Tpr2g2422 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Tpr2g2422 522 CDD RRM1_U2AF65 174 256 - -
Tpr2g2422 522 MobiDBLite consensus disorder prediction 1 130 - -
Tpr2g2422 522 CDD RRM2_U2AF65 295 371 - -
Tpr2g2422 522 SUPERFAMILY RNA-binding domain, RBD 296 513 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2422 Tpr-Chr2 29166162 29173911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2422 289 371 Eukaryotic Initiation Factors Gene Family AT1G71770 25.301 3.19e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2422 K12837 - vvi:100243034 647.891