Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2419 ATGTACATAAACAGTGGTTCTTCTTCCATGGGAAGGTCTTTCAAGGAATCTCTTAAACTTCTTGAAGCTGATATTCATCATGCCAATACTTTGGCATCGGATTTTCCAAGGGAATATGACGGTGCGTGTCTTCAGATGAGAATGTCATACAGTCCGGCAGCACACCTGTTTCTTTTTCTGGTTCAATGGACAGATTGCAATCTTGCTGGAGCCCTTGGACTATTAAGAATACTAATTTACAAGGTGTATGTGGATGGGACAACTACCATGTCTACACATGAAAGAAAAGCAAGTATTAGGGAATTCTATGCGGTCATATATCCTTCTTTATTGCAACTTGAAAAAGGTGTCACTGATGCGGAGGATAAAAAACAGAAGGTTGTATGCATGGAGAGGTATCGTAAAAGAGATGACGCGGAGCACAAACAATCCTCAGACATAGACATTGAAAGAGAAGAAGAGTGTGGAATATGCATGGAGATAAATAGTAAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCCTTAAATGTTACCATGAATGGAGAGCAAGATCACAGTCATGCCCCTTTTGTCGTGACAGTCTTAAAAGAGTGAACTCGGGCGATCTCTGGGTATTCACCGATAGTAGGGACATAGTAGACATGGAAACAGTGACAAGGGAGAATCTTAGAAGACTTTTCATGTACATAGATAAGTTACCCTTGATCATTCCAGATTCCCTTTTTGACCCTTATGACTCTCACTTAAGATAA 756 0.4074 MYINSGSSSMGRSFKESLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDAEDKKQKVVCMERYRKRDDAEHKQSSDIDIEREEECGICMEINSKIVLPNCNHAMCLKCYHEWRARSQSCPFCRDSLKRVNSGDLWVFTDSRDIVDMETVTRENLRRLFMYIDKLPLIIPDSLFDPYDSHLR* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2419 251 SUPERFAMILY RING/U-box 144 198 - -
Tpr2g2419 251 Pfam Zinc finger, C3HC4 type (RING finger) 152 198 - -
Tpr2g2419 251 SMART ring_2 155 192 IPR001841 -
Tpr2g2419 251 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Tpr2g2419 251 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 7 251 - -
Tpr2g2419 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 217 IPR013083 -
Tpr2g2419 251 PANTHER RING FINGER PROTEIN 41, 151 7 251 - -
Tpr2g2419 251 ProSiteProfiles Zinc finger RING-type profile. 155 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2419 Tpr-Chr2 29151284 29154657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2419 147 196 C3H Transcription Factor Family AT5G41350 39.623 3.32e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2419 K25840 - gmx:100789769 465.692