Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2410 ATGACCATGGCGGATGATGGATTTCAATTACCACTGTTTGGTGACGATGGAGATGAATCTGATGATGAAAAGCTTGCAATGGATATCGAATCGTTTCTTAGCGTTCTTGATGAAGATTGTGTTCCTTCTGAGAGTAGTCACGAGGATTCTTCATTGAAAGATGTTTCACCTGGTGAATCTGGGATCCATGATAATTTTTTACTTCAAAATGGGAATTCAGTGTTTGACTCCGAATATGAAAACCACAGACCTTCATCACAGACCTGCTCTTCCCCAAATGCTTTTGCTGGTGGTTACAGGGACTCGTTCACCGTTGTTGAAAGTGATGAAACTTGCTATACAGAAAGGGCAGGAGTTTCTGAACGGGAGACGCCTTCTTACATTGTGGACACAAGTTTTGGCGAGGCAAATTCAAATACTGCAACTGTTTCTAGAGATAATTTGAACCCGAGTCTGTGGAAGGGTGACAATAAGAGCCAAATCAATCATGTGGGAGATGATGTAGAATCTGAACATGCTTCATATAGCTCTATCATTGAGAATGCTGATGGAACTCTTGAAGATTATGAAACAGCTTTGAAAGACATTATTGGAGTTTCTAGGCAGCTGGAAAATGACTCCTGTACATCTTTTGAAATGCCGTTTATGGATGCCGACAGATCTACACATTTTGGAACTAAAACTGATTCAACAATTTGTCAAGGTTCCGATGTTCCTAGTGATTTTAGTGGCCACTATCCTTCTTTGAATTGTTACCAGGGTATAGATGTTAAACTTGCTATTACTGACAGTTCTGGTTATTTGCCTAATCGTGTTTGTCCTGAATTCTGGAAAAATGAAGAGACAATGAGTAACACGATGGTTGAAAAAATGGAGTTCTTAACTGATAATACAAATATGATTGGCGGCATGCATTTGAGCACTATTGGTCGGATCCCTTTTCACGATACTCAATTTATGCCGGTAGATAATGAATATCCTTCATTTTTTCCTGGTAATGTTATATTTGAAGACAGTGAATCAGTGCAACAATCATCTTGTGCTCCATATATTTCAAGAGAATGCCAGTCATTTAATGTCAAAGCTGAAGCAGATGAAATGGTTATGCCTTACCAAAATAATTTTCAGAATGACAATGCTGGTCTAGAGGTGAAACAATTACCCGGTATTTTCCCTATCAATGGATGTCATAATTATGATTTTTTCAAGAGCGAGGATAGTGATACAATCGTAACAACTGAGAATGCCAATTATTATCAAGATTTTATTGATGATGAAACTGCTATCAAATTTCCAGGAAACATTGGAAATTTAAATTTCAGATCCTTAAGCAAATCTCTATCTGTTGCCCGGCCATCGATTACCAACGGGAATCAATATAATTGTGGTATGAGTGAACTAGATAGTAAGCTGAGTGAATATAAAAGTATTGATTTGCAACTTTCCAAAAGAAGTACTGAGGGATCCAATGACGAAGATGACTGCGATGTTTGCATTATTGAAGACATCAGTCATCCTGCACCTACAAGTCGGTCTGTCGAAGTCAAGAATTCCCTTCATATGTCACAATCTTCTAGATTTGATTATACCCAATCTTATATGGCGGGAGGCACAAGACCAAAGGCACGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTAAGTCCACCAGATGGACTACTGGCAGTTCCTCTTTTACGTCACCAGAGAATTGCTCTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTGCTTTAATACTAAAGGAAATGCCTCCATTGCTTAAGACGTGCGCTAATGCTCAAAAAAGTGTATTAGAAACCTTGGATTTGGATGATGACCCACTTCCTGAGAATGGTGTAGTGAAGATGGAATCTGATGTGTGTCAATCTAATAGAAATGCAAAGGGTAGACCATCTGCGGGAACCCTTGTTGTTTGTCCAACTAGTGTCCTGCGACAGTGGGCTGATGAGCTGCATAATAAGGTAACCTGCAAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGCAGTCGAACCAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTTTGACAACCTATTCAATTGTTAGCATGGAGGTCCCCAAGCAGCCTCTGGTTGACAAAGATGATGGAGAAAAAGGAATTTATGAAGATCACGCCGTTCCAAGTAGGAAAAGGAAATGCCCTACTAGTTCTAAAACCAGCAAGAAGGCTTTGGACAGCATGATGCTTGAGGCTGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCCTGGATGAGGCCCAAAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCTAAGCGCAGATGGTGCTTGTCAGGGACTCCAATCCAGAATTCCATTGATGATCTCTACAGTTACTTTAGATTTCTTAGATATGATCCTTATGCCGTGTACACATCTTTCTGTTCTACGATCAAGATTCCTATCAGCAGAAATCCATCAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACAATCATGTTACGCCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATATCTTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTGGAGGCTGATTCACGTGCACAGTTTCAGGAGTATGCTGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGACTTAGACAAGCTTGCGATCACCCTCTGCTTGTCAAGCCTTACAATTCTACTACTCTCTGGAAATCCTCTGTTGAGACGGCAATGAAGCTTCCTCAGGAAAAACAGTTATTTCTTTTAAAATGTTTAGAGGCTTCCCTGGCCCTCTGCGGTATCTGTAATGACGCTCCCGAAGAAGCTGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAACCAGTGTATTTGTGAACATCTAACTGGTGAGGACAATCAGTGTCCTGCTACAAACTGCAAAACTCGACTTAGCATGTCTTCAGTGTTCCCCAAAGCTACGCTGAACAGTTCTTTAGCTAATCAGGCCTGTGATCATTTGCCTGGTTACTCTGGTTCTGTGGTTGAGGATTCTGAACATTGTTCTCAGACTCAACCGTGCGATTCTTCAAAAATAAAAGCTGCACTTGAGGTTTTGCAGTCATTGTCTAAGCCACAAGGCCATAATTCCCCAAAAACATCTGTGCAGAGCACTTCTAGGGAAAGTACTGATTGCAGCTCCACTTCTGCCGATAATGGAAAATCCTTTAGTGATTTTCCCGAGAAGAAAAGCTCTAATGATTCAGTTGGTTCTCCAGGAGAGAAAGCTATAGTGTTTTCGCAGTGGACGGGGATGCTAGATTTACTTGAAGCTTGTCTTAAGAATTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCTGTCATGTCAAGAGATAAAGCTGTTAAAGATTTTAACACACTACCTGAGGTATCAGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTGGCAGCTTGCCACGTTCTCATGTTAGATCTATGGTGGAATCCTACAACTGAAGATCAAGCCATAGACAGAGCGCATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGGTTGACTGTCAAAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGACAGATGGTTGCATCTGCATTTGGAGAGGATGGAAATGGTGATCGTCAAACTCGTCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3918 0.4084 MTMADDGFQLPLFGDDGDESDDEKLAMDIESFLSVLDEDCVPSESSHEDSSLKDVSPGESGIHDNFLLQNGNSVFDSEYENHRPSSQTCSSPNAFAGGYRDSFTVVESDETCYTERAGVSERETPSYIVDTSFGEANSNTATVSRDNLNPSLWKGDNKSQINHVGDDVESEHASYSSIIENADGTLEDYETALKDIIGVSRQLENDSCTSFEMPFMDADRSTHFGTKTDSTICQGSDVPSDFSGHYPSLNCYQGIDVKLAITDSSGYLPNRVCPEFWKNEETMSNTMVEKMEFLTDNTNMIGGMHLSTIGRIPFHDTQFMPVDNEYPSFFPGNVIFEDSESVQQSSCAPYISRECQSFNVKAEADEMVMPYQNNFQNDNAGLEVKQLPGIFPINGCHNYDFFKSEDSDTIVTTENANYYQDFIDDETAIKFPGNIGNLNFRSLSKSLSVARPSITNGNQYNCGMSELDSKLSEYKSIDLQLSKRSTEGSNDEDDCDVCIIEDISHPAPTSRSVEVKNSLHMSQSSRFDYTQSYMAGGTRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKEMPPLLKTCANAQKSVLETLDLDDDPLPENGVVKMESDVCQSNRNAKGRPSAGTLVVCPTSVLRQWADELHNKVTCKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDGEKGIYEDHAVPSRKRKCPTSSKTSKKALDSMMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKPYNSTTLWKSSVETAMKLPQEKQLFLLKCLEASLALCGICNDAPEEAVVSVCGHVFCNQCICEHLTGEDNQCPATNCKTRLSMSSVFPKATLNSSLANQACDHLPGYSGSVVEDSEHCSQTQPCDSSKIKAALEVLQSLSKPQGHNSPKTSVQSTSRESTDCSSTSADNGKSFSDFPEKKSSNDSVGSPGEKAIVFSQWTGMLDLLEACLKNSSIQYRRLDGTMSVMSRDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRQMVASAFGEDGNGDRQTRLTVDDLKYLFMM* 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2410 1305 SUPERFAMILY RING/U-box 994 1053 - -
Tpr2g2410 1305 Pfam Zinc finger, C3HC4 type (RING finger) 997 1033 - -
Tpr2g2410 1305 Pfam SNF2-related domain 594 958 IPR000330 GO:0005524|GO:0140658
Tpr2g2410 1305 ProSitePatterns Zinc finger RING-type signature. 1012 1021 IPR017907 -
Tpr2g2410 1305 Coils Coil 186 206 - -
Tpr2g2410 1305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 990 1048 IPR013083 -
Tpr2g2410 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 889 1304 IPR027417 -
Tpr2g2410 1305 CDD SF2_C_SNF 1148 1257 - -
Tpr2g2410 1305 Gene3D - 549 894 IPR038718 -
Tpr2g2410 1305 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 429 1304 - -
Tpr2g2410 1305 CDD DEXDc_SHPRH-like 574 881 - -
Tpr2g2410 1305 SMART ring_2 997 1035 IPR001841 -
Tpr2g2410 1305 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1138 1300 IPR001650 -
Tpr2g2410 1305 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 589 843 IPR014001 -
Tpr2g2410 1305 SMART helicmild6 1164 1247 IPR001650 -
Tpr2g2410 1305 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 429 1304 - -
Tpr2g2410 1305 Pfam Helicase conserved C-terminal domain 1149 1247 IPR001650 -
Tpr2g2410 1305 MobiDBLite consensus disorder prediction 1098 1147 - -
Tpr2g2410 1305 SMART ultradead3 570 858 IPR014001 -
Tpr2g2410 1305 ProSiteProfiles Zinc finger RING-type profile. 997 1036 IPR001841 -
Tpr2g2410 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 558 881 IPR027417 -
Tpr2g2410 1305 Gene3D - 896 1305 IPR027417 -
Tpr2g2410 1305 MobiDBLite consensus disorder prediction 1099 1132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2410 Tpr-Chr2 29041310 29050943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2410 454 1304 RAD5 or RAD16-like Gene Family AT1G61140 60.973 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr2g2410 SNF2_N 2.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2410 - - gmx:100805307 1752.64