Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2385 ATGAATGACTTATTCTCAAGCTCCTTCAAGAAATATAGTGACTTGAAGGAGCAAACTACCACTGATGATGTTGAAGCAGGTAAAGAAAGTATCAACCTTGATAAATTCTTTGAAGATGTTGAGAATGTGAAAGAAGACATGAGAACAGTTGAGAAGCTATATAGAAAATTACAAGAGTCTAATGAAGAAAGCAAAATTGTCCACAATGCTAAAACAATGAAAGATCTTAGAGCAAAGATGGATAAAGATGTTGAACAGGTTCTTAAAAGAGTTAAAATCATAAAAGGTAAGCTCGAAGCATTAGAACGTTCTAATGCTGCGAATAGAAATATTCCGGGATGTGGTCCCGGTTCATCGGCAGATAGAACAAGAACTTCTGTGGTTAGTGGATTGGGAAAAAAACTTAAAGATCTGATGGATGATTTTCAAGGATTAAGAGCTAGAATGCAACAAGAATATAAGGAAACAATTGAAAGAAGGTATTTTACAATAACAGGTGAAAAAGCTGATGAAGATACTATTGAGAATTTGATATCAAGTGGTGAAAGTGAAACTTTTATGCAAAGAGCAATTCAAGAACAAGGTAGAGGTCAAATTATGGATACAATATCTGAGATACAAGAAAGACATGATGCTGTTAAAGAAATAGAGAAAAATTTGATTGAGTTACATCAAGTTTTTTTGGATATGGCAGCACTTGTTGAATCACAAGGACAACAATTGAATAATATCGAGTCTCATGTCGCGCATGCAAGTTCTTTTGTTAGACGAGGAACCGAACAACTTCAAGAAGCAAGAGAGCATCAAAAAGAATCAAGGAAATGGACATGTTATGCAATACTTCTCGGTATTGTTCTTATCATTGTGATCCTATTTCCATTCTTGATGTCAATTCTACCTCACTTGATACTTTAG 915 0.3432 MNDLFSSSFKKYSDLKEQTTTDDVEAGKESINLDKFFEDVENVKEDMRTVEKLYRKLQESNEESKIVHNAKTMKDLRAKMDKDVEQVLKRVKIIKGKLEALERSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDLMDDFQGLRARMQQEYKETIERRYFTITGEKADEDTIENLISSGESETFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEAREHQKESRKWTCYAILLGIVLIIVILFPFLMSILPHLIL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2385 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Tpr2g2385 304 CDD SNARE_syntaxin1-like 202 264 - -
Tpr2g2385 304 Gene3D - 192 295 - -
Tpr2g2385 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Tpr2g2385 304 Coils Coil 84 104 - -
Tpr2g2385 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tpr2g2385 304 CDD SynN 33 190 IPR006011 GO:0016020
Tpr2g2385 304 Coils Coil 135 155 - -
Tpr2g2385 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Tpr2g2385 304 Coils Coil 40 63 - -
Tpr2g2385 304 Gene3D - 33 160 - -
Tpr2g2385 304 PANTHER SYNTAXIN 6 295 IPR045242 -
Tpr2g2385 304 PANTHER SYNTAXIN-124-RELATED 6 295 - -
Tpr2g2385 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Tpr2g2385 304 SMART tSNARE_6 198 265 IPR000727 -
Tpr2g2385 304 Pfam SNARE domain 240 291 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2385 Tpr-Chr2 28754582 28756067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2385 1 304 SNARE and Associated Proteins AT1G61290 78.947 0.0 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2385 K08486 - gmx:100818999 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1846 3 16655695 16656615 Tpr2g2385 2 28754582 28756067 PCT