Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2384 ATGATTACAGATCAAGCACCACCAACCATGGCCTCTACTCCATCATCATCTTCTTCCTCTTCCAAACTATGCTTCAATTCTGACTGCAAAGACTTCAAGTCTGAAAATAGACCTAAGAAAGGATGGAGACTACGTTCTGGTGACCTAGCTCAACTCTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACGCAAATACTTCTGGTTGGAGGAATTGTGAAACTTGTAGAAAGCGAATTCATTGCGGGTGTATTGTTTCAAGTAACACCTTTGTATTGTTGGATCCAGGAGGAATTGAATGCTTTACATGTGCCCGCAAAAGTATTATTTTGCCATCTAACTTGGCGTGGCCACAATCTTTATCCTTTCAAAATCGTTTATCGGAGAGATATAGAGACATATCTGCCAAAAGTTGGAGTCAGTTAGCTGGATCAGGACCTGTACCCTGGAAGCAAGCACCCAGTTTGTTCAATTCAGCTTCTTCTTCTGACCAGCCTGCGGATGTGCACTCTTTAGGTGAATTATCAAATAATTTTGACAAAACTTATGGCAATGAAAGGTTACCCACCTCATCCTTGGAAAAGAAAAATGAGGATTTGTCTGGAATATCAGCTAATTGGAATGCCAAATTTGGTTCAAGGGAAATGGTGCTTATGAATGGATTGAGGAGCGAGGACAAATCAGGCCCGTGTTTAAATATGTGCCAACAGCCTCATTCTCTGAAGGAAGAATCATCTTCTCAACCATTTGGTTTATCAGTACCTTATTCATCGCCGAATGAAAGAAATGGTCAAATTGGGGTAACCGGAATTCATCCACAACAAACTCCACCTCATCCAGGCAATCATTTTAGCGGCACTGTGCAATTAGCTCTTGACCCATCAGGTGAAGCTCAGGTTCGCAATGGGCGACCTCGAGCAGATGCCCGAGGAAGAAGTCAATTGTTGCCACGGTACTGGCCCAGGTGTACTGATCTGGAGTTACAACAAATATCTATTGATTCTAATTCTGTAATAACTCCCTTGTTCCAAAAAACACTGAGTGCTAGTGATGCTGGGAGAATTGGGCGTTTGGTACTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGGTGCCACTTAAAATCCTTGATGCAAAAGGAAAGGAATGGATATTTCAGTTCCGCTTCTGGCCGAATAACAACAGCAGAATGTATGTTTTAGAGGGTGTAACTCCATGCATACAATCCATGCAGTTGCAAGCAGGTGACACAGTAACGTTTAGCCGGTTGGAGCCCGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTACAAATGCTATGCCACCACCTGATCAGGATAATGAAGCTAGTAAGACTGGAAACGGACTTTCTGCACAAGACGTTGAATTGACTGATCCCAGTTCTTGGTCAAAAGTTGATAAGTCAGGATACATTGCAAAAGAAGCACCGGGGAGTAAATCTTTAATCTCTAGAAAGAGAAAGAGCAACATATTGGGTTCAAAAAGTAAACGTCTAAAAATGGGAAATGAGGATATAATAGAACTGAAGATTACATGGCAAGAAGCTCAAGGACTGCTCCGCCCCCCTCCTAACCATGTTCCAAGTATTGTGGTGATTGAAGGCTTTGAGTTTGAGGAATATGAGGATTCTCCGGTGCTTGGGAAGCCAACTATTTTCACTACTGATAATATGGGTGAAAAGATTCAGTGGTCTCAATGCGAAGATTGTCTGAAGTGGCGTAAATTGCCAGCATCTGCACTTCTTCCATCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTTACAGCAGAGCAACTTGAGAATTTGTTACCTCCTTATAATTCAGTTTCCAAGAAAATGAAGGCTGCTAAGCAGGATCCTGATCATGCTGAAGCTTTGGAGGGACTAGATACACTTGCAAATCTAGCTATCCTAGGGGAAGGGGATGCTCTCCAGGCATCTTCCCAGGCCACAACTAAACACCCACGACATAGACCTGGCTGCTCTTGCATTGTTTGCATCCAGCCTCCAAGTGGAAAGGGCCCCAAACATAAGCAGACATGCACATGTAATGTCTGTCTAACGGTGAAACGTCGTTTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAATCAGAAAGAGAAGCAGAGACAACACGTAAAAAGATTCTGCAACAGAATTCCCAGCAATTGCCTTCACCCGAAATTTTGCTTGATGATGATTCCTTGCATAATAGTAATACGGGTGATAGTAGCCCAAACATGAACAAGGAGGGTAATGACTGTTCTGATGATGATCCTCACCGGATAAAATCATCCATGTCTCCGTTCAAAGGCCAAATTGACCTTAATATCCAGCCGGAGCGAGAAGAAGAATTATCACCTGGTTCAGATTCTGGTGGTGTGATGAAGCTGCTCCATGATGCTACTGAGATGTATCTCAAGCAGCAGCAACAGCAGCAGCAGAAGACTGTGTTGAACTCTGGAACTGGAGATTCATCAGGTAGTCAGTCACAACAGGTAGATGTAGTGAGGGAAGAGAAGCTTAGCAATGGTGTTATTCATGGTAGCAGTAGTCATAATGCAGATAAGGAGCCTGTCCAGTCTTTATATATGAATGTGTAA 2697 0.4327 MITDQAPPTMASTPSSSSSSSKLCFNSDCKDFKSENRPKKGWRLRSGDLAQLCDRCGSAFEEGRFCDIFHANTSGWRNCETCRKRIHCGCIVSSNTFVLLDPGGIECFTCARKSIILPSNLAWPQSLSFQNRLSERYRDISAKSWSQLAGSGPVPWKQAPSLFNSASSSDQPADVHSLGELSNNFDKTYGNERLPTSSLEKKNEDLSGISANWNAKFGSREMVLMNGLRSEDKSGPCLNMCQQPHSLKEESSSQPFGLSVPYSSPNERNGQIGVTGIHPQQTPPHPGNHFSGTVQLALDPSGEAQVRNGRPRADARGRSQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGVPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATNAMPPPDQDNEASKTGNGLSAQDVELTDPSSWSKVDKSGYIAKEAPGSKSLISRKRKSNILGSKSKRLKMGNEDIIELKITWQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDSPVLGKPTIFTTDNMGEKIQWSQCEDCLKWRKLPASALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPYNSVSKKMKAAKQDPDHAEALEGLDTLANLAILGEGDALQASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKILQQNSQQLPSPEILLDDDSLHNSNTGDSSPNMNKEGNDCSDDDPHRIKSSMSPFKGQIDLNIQPEREEELSPGSDSGGVMKLLHDATEMYLKQQQQQQQKTVLNSGTGDSSGSQSQQVDVVREEKLSNGVIHGSSSHNADKEPVQSLYMNV* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2384 898 SUPERFAMILY DNA-binding pseudobarrel domain 346 451 IPR015300 -
Tpr2g2384 898 MobiDBLite consensus disorder prediction 456 478 - -
Tpr2g2384 898 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 19 824 - -
Tpr2g2384 898 MobiDBLite consensus disorder prediction 450 478 - -
Tpr2g2384 898 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 19 824 - -
Tpr2g2384 898 SMART B3_2 349 449 IPR003340 GO:0003677
Tpr2g2384 898 CDD B3_DNA 347 448 IPR003340 GO:0003677
Tpr2g2384 898 Gene3D - 581 634 - -
Tpr2g2384 898 Coils Coil 731 753 - -
Tpr2g2384 898 MobiDBLite consensus disorder prediction 728 759 - -
Tpr2g2384 898 MobiDBLite consensus disorder prediction 730 745 - -
Tpr2g2384 898 ProSiteProfiles B3 DNA-binding domain profile. 349 450 IPR003340 GO:0003677
Tpr2g2384 898 Pfam B3 DNA binding domain 349 448 IPR003340 GO:0003677
Tpr2g2384 898 MobiDBLite consensus disorder prediction 838 898 - -
Tpr2g2384 898 MobiDBLite consensus disorder prediction 876 898 - -
Tpr2g2384 898 MobiDBLite consensus disorder prediction 838 869 - -
Tpr2g2384 898 ProSiteProfiles Zinc finger CW-type profile. 577 627 IPR011124 GO:0008270
Tpr2g2384 898 MobiDBLite consensus disorder prediction 798 822 - -
Tpr2g2384 898 MobiDBLite consensus disorder prediction 1 22 - -
Tpr2g2384 898 Gene3D - 327 453 IPR015300 -
Tpr2g2384 898 MobiDBLite consensus disorder prediction 770 789 - -
Tpr2g2384 898 Pfam CW-type Zinc Finger 583 624 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2384 Tpr-Chr2 28744347 28753900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2384 280 734 B3 DNA Binding Superfamily AT4G32010 54.915 3.48e-163 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr2g2384 B3 6.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2384 - - gmx:100782114 1486.86