Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2348 ATGGCTTCTTCATCATCTTCTTCAGCAAACCGCGAAGGACACTACAGAGGTGTTAGGAAGCGACCATGGGGTCGCTATGCAGCTGAGATTCGTGATCCATGGAAGAAGACACGTGTCTGGTTAGGTACATTTGATACACCTGAAGAAGCTGCTCTTGCTTACGACGGCGCCGCTCGTTCTCTCCGTGGAACTAAAGCAAAAACTAACTTTCCACCGGCGCCGGGAGCTGGAGGTTTATGTGTTGATCTCAATCTCAACGCTCCTTCTTCTGATCTTAGGTGGCCATCTGTTGGTTGTTCGCGTGGGATTAAGCTTACTGAGTTTCTTCAAACTGGTGTTCTCAAAGATTTCAACGCTCCTCATCAGCTTCCTCCTCAAGCTCCTGTTGTTACGGTGGCTGGACAAAGACATGGTGAAGATCCTTTTGGTGTTTCTGGGAGAGTTATGGTGCCTGAGAACTCTCCTACGGCTGCTTATTTGGGACTTGTTAGACGTGGGATTCCGATTGATTTGAATGAACCTCCACCTTTGTGGCTATGA 540 0.4833 MASSSSSSANREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGTKAKTNFPPAPGAGGLCVDLNLNAPSSDLRWPSVGCSRGIKLTEFLQTGVLKDFNAPHQLPPQAPVVTVAGQRHGEDPFGVSGRVMVPENSPTAAYLGLVRRGIPIDLNEPPPLWL* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2348 179 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Tpr2g2348 179 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Tpr2g2348 179 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Tpr2g2348 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 9 167 - -
Tpr2g2348 179 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Tpr2g2348 179 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Tpr2g2348 179 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Tpr2g2348 179 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Tpr2g2348 179 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Tpr2g2348 179 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2348 Tpr-Chr2 28329940 28331437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2348 5 179 AP2-EREBP Transcription Factor Family AT1G28360 48.223 4.69e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g2348 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2348 - - cam:101504196 271.166