Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2337 ATGGATTCATGGAGTTTTGTTCCCGAAGATAATAAAGGGTATGTTTCTAAAGCTTCAATCTTGGGTTGGGAACTTAAAACCCCATCTAGTTTTTTAGGTCAACAAAACATTGAAAATGACAATAATCAAGGTTTTGAGGAATTGGGTTTTCATGGAATGTTGGGAAAACAATTCTCTAATGTTATTGATGTTGATGATGATGTTGTTGATGATGTTCACAGAAGAAAGATTGATAATGATGTTGTTATGGCTGCACCAAATGCATTTTCTGGAAGAGAACTTTCAAACTCATTAGGAGACACTAATGGATGTAATTCAATCATTGATTTGAAGCTTGGTAGGTTTGGTGAGCATGGAGATGCAATTGGAACATCATTTTCAAAAGGGACTGCGATTTTATCCTCGTCTGGATCATCATCGACACCGCCTAAGAGAGTGCGGTCTTCAAGCGTTCATTCTCAGGTTGCTTACTGCCAAGTCTATGGTTGTAATAAGGATCTGAGTGGTTGTAAAGATTATCACAAAAAGCACAAAGTTTGTGATACTCATTCAAAGACTTCCAAAGTTATAGTCAATGGTATTGAACAAAGATTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGTTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAACGCCGCAGAAAGCCACAAGTCGGTATTCACTCGGGAAGAGCTGGGAGATTGCTTCAGTCATATAGCGATAGCAGATTCCAGGGAAGCATGCTAACATCGGCATCTTTTATATGCCAAGAGTTACTCCCCAGTGAGGTTTTGTCTTCTGAGAAATGTGGAACCAGTAACTGGTGGAGGCCTATAAAAGGCGAAGACGAAACTGGAACCGGTTTTCGGCCTCCTTCTTCTGTTCCAATTACCAATGCACATCCTCATTCACAAACTCTATTTCCTTCATACAGTAATAAGCAATTTCCCTTCCTTCATGAAAACGGAGCTGCATCTGCTACAGGAAGCATGTTCTGTGAAAACAATACTCAATATCCTCCTATCCTCGGAGGCTCGAGTTCTGGATCACAATCATTATTCCAAGATACTTCCTTAGGAAGTGAGGACTTCCACGTTTTTGAAACAGAATCAACTGTTCAAGGATTATCGGGAGTTTCAGACGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGTAATCCCAATGCCTCGTCCTTTGGTCATTCCAAGCAGCCATTACAGCATGAGTGGAGTGTCGGATAGGTTTCCGTCTGAGCTAAATCCTACAGATGGAAGTCATCTTAGTCCTATATTGATATCCGACAATGATGAAATTGTACATTTCGAAATGGCTGATGGGATTTTCCAAGGGTCTGATTTTGGCAATGTGAAAGATCGTCTTTCATGTGAAGATGGCATGACCATTGACTTGCTTCAATTATCATCACAACTTCAGCGTGTCGAACATCAGAGACGAGCCTTGCAGGTGAAGCAAGAAAACGATTCTTCTTGCTCTCTTCGGATTACTTAA 1566 0.4087 MDSWSFVPEDNKGYVSKASILGWELKTPSSFLGQQNIENDNNQGFEELGFHGMLGKQFSNVIDVDDDVVDDVHRRKIDNDVVMAAPNAFSGRELSNSLGDTNGCNSIIDLKLGRFGEHGDAIGTSFSKGTAILSSSGSSSTPPKRVRSSSVHSQVAYCQVYGCNKDLSGCKDYHKKHKVCDTHSKTSKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQSYSDSRFQGSMLTSASFICQELLPSEVLSSEKCGTSNWWRPIKGEDETGTGFRPPSSVPITNAHPHSQTLFPSYSNKQFPFLHENGAASATGSMFCENNTQYPPILGGSSSGSQSLFQDTSLGSEDFHVFETESTVQGLSGVSDGGCALSLLSSQSQNSSSQSSVIPMPRPLVIPSSHYSMSGVSDRFPSELNPTDGSHLSPILISDNDEIVHFEMADGIFQGSDFGNVKDRLSCEDGMTIDLLQLSSQLQRVEHQRRALQVKQENDSSCSLRIT* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2337 521 Pfam SBP domain 158 231 IPR004333 GO:0003677
Tpr2g2337 521 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 521 IPR044817 GO:0003677
Tpr2g2337 521 SUPERFAMILY SBT domain 156 236 IPR036893 GO:0003677|GO:0005634
Tpr2g2337 521 PANTHER 1 PROTEIN, PUTATIVE-RELATED 32 521 - -
Tpr2g2337 521 Coils Coil 489 509 - -
Tpr2g2337 521 Gene3D - 148 219 IPR036893 GO:0003677|GO:0005634
Tpr2g2337 521 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2337 Tpr-Chr2 28205309 28209414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2337 108 274 SBP-box Gene Family AT1G69170 52.096 2.19e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr2g2337 SBP 5.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2337 - - gmx:100777766 706.442