Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2324 ATGTCAAGTAGAATGGATTTTTTCAATAATTCACAAGATCCATTCAATGGTGAGTTAATGGAAGTTCTTGAACCTTTTATGAAGAGTTCTTCCACTACTACTCCTACTCCATCTTCATCCTCTTTACCTTTAACTTCATCACCATTTTACTCTTCTACCCCCACTTCCTATTTCCAACCTTCACAGCCCAATTTCTACACAGAAAATGGTTATTGTTCATCCATGATGACCTACCAATTCCCCTCCTCAGGTAGTAGTAATTCATCAAATAGCCAAAATAATTTCATTGGCTTTGAACAACCACAACCAAATTCTGTTCTTGGGCTAAACAACTTAACCACATCTCAAATTAATCAGATCCAAGCCCAGATCCAGTTTCAGACCCAACAACAAAACAACAACTTATCCTTTCTTGGGCCTAAGCCCATCTCAATGAAACAGCCTGGTATACCTCCAAAGCCCACTAAGCTTTATAGAGGTGTTAGGCAAAGACATTGGGGAAAATGGGTTGCTGAGATAAGACTACCTAAAAATAGAACAAGACTTTGGCTTGGTACTTTTGATACCGCTGAAGAAGCTGCTTTAGCTTATGATAGAGCTGCTTATAGATTAAGAGGTGATTTTGCTAGACTTAATTTCCCAAACATGAAAGACCAACAAGGTTTGTTTGGTGAGTTTAAGGTTTTGCATTCATCTATTGATGCTAAACTTGATGCTATTTGTGAAAGTCTAGGTGATGTGAATAAACAAGGTAAGATTGAGAAAAGTGTGAGAGGTTCTAAGAAGGATTTGAAAAAACAAGTTCAAGTTCAAGTTCAACCTTTGGATGTTGAGAATAATGATGACAATAACAATAAGGTTGTTGTTGTTGAAGGCTCAGGCTCTTTGTCTTCTCCTGAAGGTTCTGATGATTCTTCTCCACTTTCTGATCTTACTTTTGCTGATTTTGCCGAGCCACAATGGGAAAATGGTTCTGAACAATTTAATCTGCACAAGTTTCCTTCTTATGAGATTGATTGGGATTCTCTTGGAAAGATGATGGATTGA 1047 0.3754 MSSRMDFFNNSQDPFNGELMEVLEPFMKSSSTTTPTPSSSSLPLTSSPFYSSTPTSYFQPSQPNFYTENGYCSSMMTYQFPSSGSSNSSNSQNNFIGFEQPQPNSVLGLNNLTTSQINQIQAQIQFQTQQQNNNLSFLGPKPISMKQPGIPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDFARLNFPNMKDQQGLFGEFKVLHSSIDAKLDAICESLGDVNKQGKIEKSVRGSKKDLKKQVQVQVQPLDVENNDDNNNKVVVVEGSGSLSSPEGSDDSSPLSDLTFADFAEPQWENGSEQFNLHKFPSYEIDWDSLGKMMD* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2324 348 CDD AP2 156 215 IPR001471 GO:0003700|GO:0006355
Tpr2g2324 348 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Tpr2g2324 348 PRINTS Ethylene responsive element binding protein signature 180 196 IPR001471 GO:0003700|GO:0006355
Tpr2g2324 348 SUPERFAMILY DNA-binding domain 157 214 IPR016177 GO:0003677
Tpr2g2324 348 ProSiteProfiles AP2/ERF domain profile. 157 214 IPR001471 GO:0003700|GO:0006355
Tpr2g2324 348 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Tpr2g2324 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 342 - -
Tpr2g2324 348 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Tpr2g2324 348 SMART rav1_2 157 220 IPR001471 GO:0003700|GO:0006355
Tpr2g2324 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2324 Tpr-Chr2 28019441 28021416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2324 1 343 AP2-EREBP Transcription Factor Family AT1G78080 45.924 5.75e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g2324 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2324 K09286 - gmx:732559 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2324 2 28019441 28021416 Tpr2g2324 2 28019441 28021416 ECH