Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2316 ATGGGTCGTGTTAAACTTGAGATTAAAAGAATAGAGAACACAACAAATCGACAAGTTACATTTTCAAAGCGAAGAAATGGTCTCATCAAAAAAGCTTATGAGTTATCAATTCTTTGTGATATTGATATTGCCCTTATAATGTTTTCTCCATCAAATCGTCTTAGTCATTTTTCGGGTAAAAAAAGGATAGAGGATGTTTTAACTCGGTACATTAATCTTCCTGACAATGAAAGAGATAATGCTGTCAGTTTTCCAGAGCTGCCCTACCGGAGGGGTATTCAGAACAAAGAGTATTTACTCAGGACGCTTCAGCAATTGAGAAGTGAAAATGACATAGCTCTTCATATGTCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAGTAGGTTACAACAACAACTTCAAATGGCAGAGGAGCAGATAAGGATATACGAACCCGAACCATTAAAGATGACATCTATGGCGGAGCTCGAAACAAGTGAAAAAAACGTTGTAGAAACCTTGGCACGTGTCATGCAGAGAAAGGAACTTTTATTGAACAACCAGCTATCTTCATATGATCCATCTGGTATTCAGGGGATGCCGACATCATTCGAGAATGTAGGTTGGTTACAGGATGGTACCCAAAATCATCCCCATTTGTTTGATGCATCAGCTCCTTTGGATCCTCTCAGGGATTTGTCCTCTACGGTGTATGGTTCATTTTCACAAGGGACGAGTTCAAATGTTGACCAAAGAGGAATAGGAGAGTGCCACGTGGCAAACCCAAATGATGCCAAGTGGGAGAAGCCGGCAAGAGGGAGATACAAGTGTAATATTGATGCGTCGTTCTCGTCTCAACTTAGCCGTGTTGGTATTGATATGTGCATCTGTGATGATGAAGGTAGATTTGTGCTCGCGAAGACTATATGGAAATCACCAATCTGTAATGTGGATTTAGGCGAGGCACTTGGTCTTCTGCATGCCATCCGGTGGGTTCAAGAGCTGCAACTTGGTAATGTGGATTTTGCTATGGATTTGTATCATGGAAGTCTAAGAAACAGACCATTTTGGCACAGTCCACTATGGAATCTGAAATGA 1098 0.4117 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLSHFSGKKRIEDVLTRYINLPDNERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALHMSNPGDINSEIEELQQEVSRLQQQLQMAEEQIRIYEPEPLKMTSMAELETSEKNVVETLARVMQRKELLLNNQLSSYDPSGIQGMPTSFENVGWLQDGTQNHPHLFDASAPLDPLRDLSSTVYGSFSQGTSSNVDQRGIGECHVANPNDAKWEKPARGRYKCNIDASFSSQLSRVGIDMCICDDEGRFVLAKTIWKSPICNVDLGEALGLLHAIRWVQELQLGNVDFAMDLYHGSLRNRPFWHSPLWNLK* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2316 365 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr2g2316 365 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr2g2316 365 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr2g2316 365 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr2g2316 365 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Tpr2g2316 365 Pfam Reverse transcriptase-like 278 346 IPR002156 GO:0003676|GO:0004523
Tpr2g2316 365 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Tpr2g2316 365 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 266 - -
Tpr2g2316 365 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr2g2316 365 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr2g2316 365 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr2g2316 365 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 266 - -
Tpr2g2316 365 Coils Coil 126 153 - -
Tpr2g2316 365 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2316 Tpr-Chr2 27874962 27881683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2316 1 291 Type I MADS-box Gene Family AT1G22130 59.322 3.62e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr2g2316 RVT_3 9.6e-05 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2316 - - gmx:100305913 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2316 2 27874962 27881683 Tpr2g2316 2 27874962 27881683 ECH