Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2310 ATGTCTCCTCCTCAACCACGCCCTGTCCACCCCAAAATCTGGCAGTCATGTGCCGGCCCCGCCGTCACCATCCCAAAACTCCACTCTAAAGTTTACTACTTCCCACTAGGTCATTTGGAACACGCATGCCCTTTTCCTAACCCTAAAACAATCTCCATCATTCATAATAATAACCGTCCTTATATTCCCTGCATCATCACCGCCGTTGATCTCCTTTCCGATCCTCACACCGATGAGGTATTCGCCAAACTTATCCTAACTCCAATAACTGAAACACAACATGTCCAAGAACATCCTGTGGTTCCTGACCAAGAAGATGATGATGATGGTGGTGACAAAGTTGTTTCTTATATCAAGATTCTAACGCAGTCTGATTCAAATAACGGTGGTGGATTCTCCGTACCTCGCCAATGCGCTGACTTGATCTTCCCTGAGCTTGACTTTACCGATCCAATGCCATCTCAACAACTCTACATCAACGAAGTTCATGGTGGAGGAGTCTGGAAATACACTCATGTCTATCGTGGGAAACCTAAGAGACACTTGTTCACCACCGGTTGGACACCGTTTGTTAACGGAAAAAAACTCGTTGCAGGAGATACCGTTGTTTTCTTGAAAAATTCGACTGGAAATATGTTTGTAGGTATCCGCCGGAACATGAAGTTTGCCGCACCTGAAGCCGCAGCATCACAGAAGAAGAAGAAGGAGAAGGTTGAGGGTTTTTCGAGGAATGGAAAAAGAGGGAATGTAACGGAGGAGGCGGCGGTTATAGAGGCGGTGGAACGGGCGGAGAAGAATATGGCATTCGAAGTTGTATATTACCCTACTCCTAATTGGAGTGATTTTGTGGTGGAAGCTAAGGTTGTGGATGAGGCTATGAAGATTGGTTGGGAATCTGGAATGAGAGTTAAACTTGTTTTGAAGAAGGAGGAATGTTCAAAGAAGCCATTGTGTCAACCTCAAGGGGCAATCTCAAATGTCTCTATTGTCCCTAATTGGCGCATGCTTAAGGTTAACTGGGATGAACCTGAAATCTCGCAATATCCAAACTGTGTGAATCCTTGGCAGGTTGAACTTATTTCCCAGGTACCTGCACTCTATCTACCATTCCACCAAACAAAAAGACCTAGACTTACAATGGGAGAACCCTTCATTCCTATGATAGAGTTTCCTTGTTCAACAATGGAATCCTTCAACCAAACATTGTTGAATTGTGATTCTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCATTTATCATCAGCTGCATCAACTTCTTCCAACTTGTTGAATTATAATGGCTATGGTTTTTTTGTGAATAGTATAATGGCTGGGATGAGTACTATGCCAAAAGAGATAAACATTGGAAGTTCTACATCTGTTGATTCGTCATCGCCTCATAACAACTTCGGGACAAATTATGTTCAAACTCACAATGATAACACAGAAAGAGTTAAGCCTAGTTCAATTAAGCTGTTTGGTAAGACCATACACATTGTTGAAAGTAGTGATTTTACTGACTCTGGTATTAAGGGATCAGAGGATGGTTCTAATGGATGCAGTCAAATTGAAGTTGTTGACAAAATTTGCACAGGAAATGCTCAATAG 1611 0.4289 MSPPQPRPVHPKIWQSCAGPAVTIPKLHSKVYYFPLGHLEHACPFPNPKTISIIHNNNRPYIPCIITAVDLLSDPHTDEVFAKLILTPITETQHVQEHPVVPDQEDDDDGGDKVVSYIKILTQSDSNNGGGFSVPRQCADLIFPELDFTDPMPSQQLYINEVHGGGVWKYTHVYRGKPKRHLFTTGWTPFVNGKKLVAGDTVVFLKNSTGNMFVGIRRNMKFAAPEAAASQKKKKEKVEGFSRNGKRGNVTEEAAVIEAVERAEKNMAFEVVYYPTPNWSDFVVEAKVVDEAMKIGWESGMRVKLVLKKEECSKKPLCQPQGAISNVSIVPNWRMLKVNWDEPEISQYPNCVNPWQVELISQVPALYLPFHQTKRPRLTMGEPFIPMIEFPCSTMESFNQTLLNCDSFPAGMQGARHDHLSSAASTSSNLLNYNGYGFFVNSIMAGMSTMPKEINIGSSTSVDSSSPHNNFGTNYVQTHNDNTERVKPSSIKLFGKTIHIVESSDFTDSGIKGSEDGSNGCSQIEVVDKICTGNAQ* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2310 536 Pfam Auxin response factor 259 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr2g2310 536 SMART B3_2 117 220 IPR003340 GO:0003677
Tpr2g2310 536 Gene3D - 114 220 IPR015300 -
Tpr2g2310 536 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 523 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr2g2310 536 Gene3D - 297 365 - -
Tpr2g2310 536 PANTHER AUXIN RESPONSE FACTOR 6 523 - -
Tpr2g2310 536 SUPERFAMILY DNA-binding pseudobarrel domain 112 224 IPR015300 -
Tpr2g2310 536 CDD B3_DNA 116 218 IPR003340 GO:0003677
Tpr2g2310 536 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Tpr2g2310 536 ProSiteProfiles B3 DNA-binding domain profile. 117 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2310 Tpr-Chr2 27770214 27772063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2310 1 526 B3 DNA Binding Superfamily AT1G77850 38.144 7.14e-117 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr2g2310 B3 6.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2310 - - cam:101503141 475.707