Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2283 ATGCCAATGAACCATGATCAAGACAGACCATCCAAAAGGTGGTATAAGCTATGCTTTATTCCCACAATTGATGACAGTTCTGATGATTCCGATACAGAATCCTTAGTCATAACGCGAAGAGCTTCAACTCACACTAGTTCTTGGGAACAAGAACAACCTTCTCCGCCACCATCACCACCGAATCTAGAATCTCAAATCAATTTGCTTTCTCCACCATTACCTCTGCCTCCGCCTCCGCCTCCGCCTCTGCTTCCAACTCTGCCTAGTTTGCCACAGTTAGTGCTGCAACGTCGGTCTTTCCAATCGCTGACTTCACCATCGCCTACTGCAACCACACAAGATCGGCCTGATAACGATAAAACTGAGTTCCTCCGAATTCCAGATAGTGTCATGAATGCCATTCACATGGTGAGAATCACAGAATTGAATTTAATAGATGAACTCTCTCAATGTCCTATTTGCATGGACGAGTTTGAATTGGGCGATGAAGCATGTCAATTACCCTGCAACCATACATTCAAATTCGAATGTATGCTTCGATGGCTTAACAACAGCGAATCATGTCCTGTTTGCAGGCTTCAGTTAAATGGTTTTGAAAGACAAGGTAGTTCTTATAATATAGGTGATGATGATGATGATGATGATGATAGTTTGGACCTTGAACCTCAAATTCAAACACAAGTGATTAATAGTTTGGAAGATCATATTCAATTTTCGCCGCATTCACAAGTTATAGATGATGGTGCAGGTGACAACTCTGATGAAGCTGAGTATGACAGTGCATGTGATGACTTGAATGATATTTGGTTTGGTAATTATCAAAGTAGTCATAGTTTACAAATTTAA 846 0.4102 MPMNHDQDRPSKRWYKLCFIPTIDDSSDDSDTESLVITRRASTHTSSWEQEQPSPPPSPPNLESQINLLSPPLPLPPPPPPPLLPTLPSLPQLVLQRRSFQSLTSPSPTATTQDRPDNDKTEFLRIPDSVMNAIHMVRITELNLIDELSQCPICMDEFELGDEACQLPCNHTFKFECMLRWLNNSESCPVCRLQLNGFERQGSSYNIGDDDDDDDDSLDLEPQIQTQVINSLEDHIQFSPHSQVIDDGAGDNSDEAEYDSACDDLNDIWFGNYQSSHSLQI* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2283 281 MobiDBLite consensus disorder prediction 36 51 - -
Tpr2g2283 281 SMART ring_2 151 191 IPR001841 -
Tpr2g2283 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 197 IPR013083 -
Tpr2g2283 281 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 25 213 - -
Tpr2g2283 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 25 213 - -
Tpr2g2283 281 MobiDBLite consensus disorder prediction 100 114 - -
Tpr2g2283 281 MobiDBLite consensus disorder prediction 22 62 - -
Tpr2g2283 281 SUPERFAMILY RING/U-box 130 195 - -
Tpr2g2283 281 MobiDBLite consensus disorder prediction 100 120 - -
Tpr2g2283 281 Pfam Ring finger domain 150 192 IPR001841 -
Tpr2g2283 281 ProSiteProfiles Zinc finger RING-type profile. 151 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2283 Tpr-Chr2 27346668 27348297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2283 129 210 C3H Transcription Factor Family AT1G68180 39.080 3.22e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2283 K11982 - ccaj:109817940 151.369