Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2273 ATGGGTCCTCCACCAAATCGCAAACAAAAGTTATCTTATGTCACTGAAAGAACAAGAAGATTGAAAGTTGTCTACGATGATCCTGACGCAACAGATTCGTCGTCGGATGAAGCAAATTACCAACCAATGATGAGGAAGAGAGTTGTTCTTGAATTTGCACTCCCTGATGTTAGTGTTACTGAAAAAAAGGTTGATAATGTACTGAGCAAGAGTAAGAGTTCTGCAAAGACAACGACAACTCCGATAGTGAAAGGAAAATCAAGCAAATACAAAGGTGTTCGAATGAGAAAATGGGGTCGATGGGCTGCTGAAATTCGTAATCCGCTTAAAGGTACTCGTGAATGGTTAGGAACTTTCAACACTGCTGAAGAGGCTTCCAAAGCTTATGAAAATAAAAAACTTGAATTTGAAGCCATAACTAAGAAGATGTGTAAAGGGAAGAAAAACACTAGCTATAATAGTGTTGTTACCTCTTTGAATGGCTCAAAGAGTGATACTGATACTTCGAATACAACATCTTCTTTGCCCGAATTGGTTAATTCGGTTTCTGATGTGATTGAGAGTGGTATGCTCTCGATCAATGAAGCTATTGTTGAGAGTCTCGAGACTAATAATCATCTGGAGGGTGAATTTTTGGAACATAATGTGGTCGACATAAGTCCTTTGAATGTAGTGCCACAATCGGATCGCAATTTGGATACTACATCTCGGTTTGACTTGGATTGGTTAACATTTGATGGTTCGGGTCAGGGGTTGGATGATCTTGGTTGCCTTGACGACCTTCCGTATTGTGATTTTGATGATAACAACGGACCTATTGATATTCCGGATTTTAATTTCGATGATATTATTGGTGCTGATGAGAGTGTTGATGATGATGAGATTGCTAGTTGGTTTAAAGATTTCCCAGAGAAGCCATGTCTATAA 927 0.3905 MGPPPNRKQKLSYVTERTRRLKVVYDDPDATDSSSDEANYQPMMRKRVVLEFALPDVSVTEKKVDNVLSKSKSSAKTTTTPIVKGKSSKYKGVRMRKWGRWAAEIRNPLKGTREWLGTFNTAEEASKAYENKKLEFEAITKKMCKGKKNTSYNSVVTSLNGSKSDTDTSNTTSSLPELVNSVSDVIESGMLSINEAIVESLETNNHLEGEFLEHNVVDISPLNVVPQSDRNLDTTSRFDLDWLTFDGSGQGLDDLGCLDDLPYCDFDDNNGPIDIPDFNFDDIIGADESVDDDEIASWFKDFPEKPCL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2273 308 SMART rav1_2 89 161 IPR001471 GO:0003700|GO:0006355
Tpr2g2273 308 CDD AP2 88 136 IPR001471 GO:0003700|GO:0006355
Tpr2g2273 308 Coils Coil 122 142 - -
Tpr2g2273 308 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 281 - -
Tpr2g2273 308 Gene3D AP2/ERF domain 88 144 IPR036955 GO:0003700|GO:0006355
Tpr2g2273 308 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Tpr2g2273 308 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Tpr2g2273 308 SUPERFAMILY DNA-binding domain 88 136 IPR016177 GO:0003677
Tpr2g2273 308 ProSiteProfiles AP2/ERF domain profile. 89 151 IPR001471 GO:0003700|GO:0006355
Tpr2g2273 308 Pfam AP2 domain 88 136 IPR001471 GO:0003700|GO:0006355
Tpr2g2273 308 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 10 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2273 Tpr-Chr2 27230205 27231131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2273 6 283 AP2-EREBP Transcription Factor Family AT1G68550 35.395 7.43e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g2273 AP2 8.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2273 - - mtr:MTR_5g057647 214.542