LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g2250	ATGAGTAGTAATTGTCAAACTTCTGATAATAGTCATAATATCAGGAATTTAATCTACAACGCTGGTGCTGGTGCTGCTGCTGGGGCAATAGCTGCTACGTTTGTGTGTCCTTTGGATGTGATCAAGACAAGGTTACAGGTTCATGGTCTGCCACCTGTGCAGAAAGGTAGTGTTATTATCACGAGCTTGCAGAATATTGTTAGGACTGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATATTGGCATTACTTCCAAACTGGGCAGTTTACTTCACATGTTATGAGCAACTAAAGGGATTGCTTCGATCACATGAGGGTTGCGACGAACTTACAGCTATTGAAAATATTATAGCTGCTGCTGGTGCTGGGGCCGCAACAGCAATATCTACAAATCCATTGTGGGTTGTTAAGACAAGACTCCAAACGCAAGGAATGAGGCCTAATGTTGTTCCTTACACGAGTGTTCTTTCCGCTTTGAGAAGGATTACACATGAGGAAGGCCTGCGAGGACTATATAGTGGCATCGTGCCTTCATTAGCTGGCGTAAGTCATGTAGCAATTCAATTCCCAACGTATGAAAAGATAAAGTTATACATGGCCAAAAAAGATAACACAACTGTCGACAAGCTAAGTCCTGGAAATGTTGCTATCGCGTCATCAATTTCAAAAGTAACTGCCTCTGTAATGACTTATCCGCACGAGGTAATACGTTCTCGACTTCAAGAGCAAGGTCATGCGAAAAATAGTGGTGTTCATTATGCCGGGGTTATTGACTGTACTAAGAAGGTTTTTCTTAAGGAAGGCATCCCGGGATTTTATCGTGGTTGTGCAACTAATCTATTAAGAACAACTCCATCTGCTGTTATTACATTCACCAGTTATGAGATGATATACCGGTTTTTGACACGAAGTATACCGCAAAATGAGCCTAGCAAACCCAAGCCAGAAGCCAGTGCCGTTAATACTAAAAATGGTGATGATAAGGATCAATCACCATCTCAATCTAACAAGATTCCTCTCAGAAACAAAGAGCAACTAACAAGACATTGA	1059	0.4193	MSSNCQTSDNSHNIRNLIYNAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPPVQKGSVIITSLQNIVRTEGFRGMYRGLSPTILALLPNWAVYFTCYEQLKGLLRSHEGCDELTAIENIIAAAGAGAATAISTNPLWVVKTRLQTQGMRPNVVPYTSVLSALRRITHEEGLRGLYSGIVPSLAGVSHVAIQFPTYEKIKLYMAKKDNTTVDKLSPGNVAIASSISKVTASVMTYPHEVIRSRLQEQGHAKNSGVHYAGVIDCTKKVFLKEGIPGFYRGCATNLLRTTPSAVITFTSYEMIYRFLTRSIPQNEPSKPKPEASAVNTKNGDDKDQSPSQSNKIPLRNKEQLTRH*	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g2250	352	PANTHER	NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC	9	312	-	-
	Tpr2g2250	352	MobiDBLite	consensus disorder prediction	309	352	-	-
	Tpr2g2250	352	Pfam	Mitochondrial carrier protein	19	106	IPR018108	-
	Tpr2g2250	352	Pfam	Mitochondrial carrier protein	213	306	IPR018108	-
	Tpr2g2250	352	Pfam	Mitochondrial carrier protein	113	205	IPR018108	-
	Tpr2g2250	352	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Tpr2g2250	352	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Tpr2g2250	352	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	9	312	IPR044712	GO:0006862\|GO:0055085
	Tpr2g2250	352	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Tpr2g2250	352	Gene3D	Mitochondrial carrier domain	1	110	IPR023395	-
	Tpr2g2250	352	MobiDBLite	consensus disorder prediction	309	344	-	-
	Tpr2g2250	352	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Tpr2g2250	352	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Tpr2g2250	352	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Tpr2g2250	352	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Tpr2g2250	352	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Tpr2g2250	352	Gene3D	Mitochondrial carrier domain	111	314	IPR023395	-
	Tpr2g2250	352	SUPERFAMILY	Mitochondrial carrier	14	299	IPR023395	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g2250	Tpr-Chr2	26945910	26950542	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g2250	33	341	Chloroplast and Mitochondria Gene Families	AT1G25380	65.944	2.33e-146	416

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g2250	K15115		-	gmx:100797064	535.798