Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2248 ATGGCTTCCTACTTTATGTTCAGTTTCATTTTGTTATTCTGTTATTTTCTGCTTCTTCCCTTTGCTGAAGCTGAACTTAAATACCCCACAGAATGTGAAGAATTTTCTTCTCCCGCTGATCAATATGTTGAGGAAATCTACTTCCCCTACACCACTGTTGATAACAAGAAATGTCGCTTTTACATTACAGCGAAAAAAATCCACGAACATCACAAAATTGATAGCATCAAATATATAAACAATTCAATTTTCATCTATATCCTGGATTACTCTGATTTTGATTCAGACTCAATTAAGAATACCCCAGTGTTCAGCCATAAAAACATGTCTAGATATAGTATTAACTGTCCTGATTACGGTATCTACTTCATTTCTAATCCTGATTATCCTCCTCCCATGCCCACTAATTTTCAATTTCCATGTCCACAACACCATCCCCTTTACTACGGTTGTTCAAAATTATTCTCATTTCTCGAAATTAAAGTAGATAAAGAGTCCTGTGAAGGATGTTGTCTGCTCGATCAAGAAACTCTAAATTTAAATTGTTTCCCAGCTCCGACTCCTCCTTATTTTGAATACCCTTCGGATACTCAAACAACGAGAAAGGAACCAGGTTTGAAGGCTGCGGTAATAGGTTTATCTATTGGATTGGCAACTACATTGTTTGTTATTCTTTTTCTGTGTTATTGGAGAATCAAATCTTCAGAAGTGAAAAACAAATCAGGAACCAATCATCGTGGTCTCTCGAGAAATACAACAATCCCGGAAAGTGGAGCTGTCTACTTTGGGATCCCTGTCTTCTCGTATGACGAGCTCAAAGAAGCAACAAACAATTTTGATCAAGCTAGACAGATTGGAGAAGGGGGCTTCGGGACTATTTACTATGGAAAGCTTGGAGATGGACGTGAAGTTGCGGTGAAGCGCCTATTTGAGCGCAACTACAGACCAGTAGAATCATTCACGAACGAAATTCAAATCCTCACACGAATGCGTCACAGAAATCTTGTATCCCTTTATGGCTGCACATCGCGCCACAGTCGTGAGTTGCTGCTAGTATACGAATACGTCCCAAATGACACTGTCAGTAGCCATCTCCACGGAGAAAAAGCAAAAAACAACCCACCATTACCATGGGCAGTGAGAATAAAAATAGCCATAGAAACCGCGGGAGCATTAACTTATCTCCATGCTTCTGATGTCATTCACCGAGACGTGAAAACCAACAACATTCTCCTTGACAACAGTTTTTGTGTTAAGGTTGCAGATTTTGGTCTTTCGAGACTATACCCTAACGATGTCACACACGTCTCTACAGCACCGAGAGGAACACCGGGCTATGTAGATCCAGAATATCGCTTATGTTACCAACTAACAGACAAGAGTGATGTATATAGCTTCGGCGTAGTTCTTGTTGAGCTAATATCATCATTGCCAGCAGTTGATTTGACAAGGGATAGAGATGACATTAAGTTGGCAAATCTAGCCGTAAGGAAGATTCGAAGAAGCGAATTTCATGAGTTGGTTGATCCTTCTCTTGGTATTCAGACAAATGAGAGATTAAAAAATGTGATAATTTCTGTTGCAGAATTGGCTTTTCAGTGTTTGCAAGATGAGAAGGAATTGAGACCCTCTATGAGTGAAGTATTGGAAGTGCTGCAGAGAATTGAAAGTGAGAAGAATGAAGGAGAGAATCATGAGGGGATTGATTTTCATCATGGAGTAGAAGTAGTACAAAGTTATGCACATCCATCACTTCCAAACACTTGGATAAAGCCACAACGCCATCAACAAACACTTTGA 1800 0.3967 MASYFMFSFILLFCYFLLLPFAEAELKYPTECEEFSSPADQYVEEIYFPYTTVDNKKCRFYITAKKIHEHHKIDSIKYINNSIFIYILDYSDFDSDSIKNTPVFSHKNMSRYSINCPDYGIYFISNPDYPPPMPTNFQFPCPQHHPLYYGCSKLFSFLEIKVDKESCEGCCLLDQETLNLNCFPAPTPPYFEYPSDTQTTRKEPGLKAAVIGLSIGLATTLFVILFLCYWRIKSSEVKNKSGTNHRGLSRNTTIPESGAVYFGIPVFSYDELKEATNNFDQARQIGEGGFGTIYYGKLGDGREVAVKRLFERNYRPVESFTNEIQILTRMRHRNLVSLYGCTSRHSRELLLVYEYVPNDTVSSHLHGEKAKNNPPLPWAVRIKIAIETAGALTYLHASDVIHRDVKTNNILLDNSFCVKVADFGLSRLYPNDVTHVSTAPRGTPGYVDPEYRLCYQLTDKSDVYSFGVVLVELISSLPAVDLTRDRDDIKLANLAVRKIRRSEFHELVDPSLGIQTNERLKNVIISVAELAFQCLQDEKELRPSMSEVLEVLQRIESEKNEGENHEGIDFHHGVEVVQSYAHPSLPNTWIKPQRHQQTL* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2248 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Tpr2g2248 599 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 166 567 IPR044652 -
Tpr2g2248 599 ProSiteProfiles Protein kinase domain profile. 279 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g2248 599 Gene3D Phosphorylase Kinase; domain 1 256 355 - -
Tpr2g2248 599 SUPERFAMILY Protein kinase-like (PK-like) 262 558 IPR011009 -
Tpr2g2248 599 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 166 567 - -
Tpr2g2248 599 SMART serkin_6 279 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g2248 599 Gene3D Transferase(Phosphotransferase) domain 1 356 578 - -
Tpr2g2248 599 Pfam Protein kinase domain 280 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g2248 599 CDD STKc_IRAK 285 555 - -
Tpr2g2248 599 ProSitePatterns Protein kinases ATP-binding region signature. 285 307 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2248 Tpr-Chr2 26919846 26927014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2248 21 561 Receptor kinase-like Gene Family AT1G25390 43.127 1.17e-138 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tpr2g2248 Pkinase 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2248 - - var:108334729 570.466