Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2243 ATGACCTTAGAAGCTGTGGTTTTTCCTCAAGATATACTTTGCAAAGATTACTTGTACTCTTTAGTTGAAATTGACACAAATAAAAGTGAAGGATCTTGTAGCCACAACAACTATGGCTGCCAAACAAATGAAGACCTTTTTGGAATCATCAACAATAACATAAACCAAAATATCTATGCAAATTGGGATTCTTCTTCTCCTTCTATGATGCAAAATGGTAAAGACCAATGGGATTCAAACTCTTCCCTTGAAACTTCCAATCTTCCACCATTCGACGTGGAAGCCACCACTACAAGTCGTCGACGCAAACGACGCCGCGCTACAAGCCCAAAGAAGGAGGAGGAAATTGAGAGCCAGAGGATGACTCACATTGCTGTCGAGCGTAACAGAAGGAAACAAATGAATGAGTATCTAGCTGTCCTTAGATCCATGATGCCGCGATCTTATGCGAAAAGGGGTGATCAAGCATCCATAGTTGGAGGCGCAATAAACTTCTTGAAGGAGCTAGAGCAACATCTACAATCCATGAAAGGACAAAAGAAAATAAACCAAAAACAGCATGAATATGGTTATGGTTCATCATCATCACCCTTTGCTGAGTTCTTCATGTTCCCTCAGTACTCAACATGTGATGAACCTCAGAACAACACGTGCTACCCTGCCAACCAGATGAATCAGTCACGTGCCATGGCAGATATAGAAGTGAGTTTGGTTGATAGCCATGCTAATATAAAGATAATGTTGAAGAAACGACAAGGACAGGTTATGAAGATGGTTGTTGGGCTACAAAACCTTGGCTTCAACATTCTACACCTTAATGTTTCTACTGTGGATGATTTTGTCCTTGTCTCGGTTAGTGTCAAGGTAGAGGAAGGGTGTCAACTGAACACGGTGGATGATATTGCAACTGCTGTGAATCAACTATCATGCAGAATCCATGTGGAAGCTATACTTTGA 957 0.4127 MTLEAVVFPQDILCKDYLYSLVEIDTNKSEGSCSHNNYGCQTNEDLFGIINNNINQNIYANWDSSSPSMMQNGKDQWDSNSSLETSNLPPFDVEATTTSRRRKRRRATSPKKEEEIESQRMTHIAVERNRRKQMNEYLAVLRSMMPRSYAKRGDQASIVGGAINFLKELEQHLQSMKGQKKINQKQHEYGYGSSSSPFAEFFMFPQYSTCDEPQNNTCYPANQMNQSRAMADIEVSLVDSHANIKIMLKKRQGQVMKMVVGLQNLGFNILHLNVSTVDDFVLVSVSVKVEEGCQLNTVDDIATAVNQLSCRIHVEAIL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2243 318 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 317 - -
Tpr2g2243 318 Coils Coil 166 186 - -
Tpr2g2243 318 MobiDBLite consensus disorder prediction 69 94 - -
Tpr2g2243 318 CDD bHLH_AtFAMA_like 121 185 - -
Tpr2g2243 318 MobiDBLite consensus disorder prediction 69 120 - -
Tpr2g2243 318 Pfam Helix-loop-helix DNA-binding domain 119 170 IPR011598 GO:0046983
Tpr2g2243 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 188 IPR036638 GO:0046983
Tpr2g2243 318 SMART finulus 124 175 IPR011598 GO:0046983
Tpr2g2243 318 PANTHER MAX DIMERIZATION, MAD 1 317 - -
Tpr2g2243 318 Gene3D - 108 187 IPR036638 GO:0046983
Tpr2g2243 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 169 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2243 Tpr-Chr2 26889316 26892900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2243 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.906 6.17e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g2243 HLH 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2243 - - gmx:100797856 333.954