Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2228 ATGCAAGCTCATACATTCTCCTACATATCTTCACTACAAACTAATGAAACTGTTGATGAGTCTTCCATTTCACTCTCTCTTGGTCCGCCTGGTACACATCACCTCAAACCTAAACTATCCTCTTCATCAAATCACTCAGCTACTAGTACTAGTACTACTACTACTACTACTACTCATCATCATCATCATCAGATTCAACACCAAAAGCAAAACTTTACCATTGATGATGATGAGGTAAGTGGTGTAACAGTTGCTCTTCATATTGGTCTTCCAAATACTATTTCACAAAACAACACACCTGTTAGAAAATCTGATCATCATTTGGCTTCAACTCCTATTCAAAGTCAATATTGGATTCCTTCTCCTGCTCAAATCCTCATTGGACCAACACAGTTCTCTTGCACAGTCTGCAATAAAATGTTCAACCGTTTCAACAATATGCAGATGCATATGTGGGGACATGGTTCACAATACAGGAAAGGGCCAGAATCTCTAAGAGGAGTAAAACCAGCTTCATCAATGTTAAGGCTTCCTTGCTATTGCTGTGCAGAGGGATGCAAAAACAACATAGAGCATCCACGGTCAAGGCCATTGAAGGATTTCAGGACACTTCAAACACACTACAAGAGAAAGCATGGAGCCAAGCCATTTGGGTGTAGAAAGTGTGGGAAACCCTTTGCAGTGAGAGGTGATTGGAGAACACATGAGAAAAATTGTGGAAAGCTGTGGTTTTGTATCTGTGGATCTGATTTTAAACATAAGAGATCACTTAAAGACCATGTTCGTGCTTTTGGTGACGGTCACGCTCCACACACCGTCGAGAGTTGTGAAGATCAGGATGTTTTGTTAGGTGATGAATATGATGAGGAATTTGACGGAGATGAAATTGATGAAGATGATGATGATGATGATAACATTGATGGAATGGTTTTTGGTTTTAATTAA 945 0.3968 MQAHTFSYISSLQTNETVDESSISLSLGPPGTHHLKPKLSSSSNHSATSTSTTTTTTTHHHHHQIQHQKQNFTIDDDEVSGVTVALHIGLPNTISQNNTPVRKSDHHLASTPIQSQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCEDQDVLLGDEYDEEFDGDEIDEDDDDDDNIDGMVFGFN* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2228 314 MobiDBLite consensus disorder prediction 33 72 - -
Tpr2g2228 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 159 IPR013087 -
Tpr2g2228 314 PANTHER ZINC FINGER PROTEIN WIP2 4 304 IPR043584 GO:0003700|GO:0010468
Tpr2g2228 314 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Tpr2g2228 314 MobiDBLite consensus disorder prediction 36 59 - -
Tpr2g2228 314 Gene3D Classic Zinc Finger 174 264 - -
Tpr2g2228 314 SUPERFAMILY beta-beta-alpha zinc fingers 128 153 IPR036236 -
Tpr2g2228 314 SUPERFAMILY beta-beta-alpha zinc fingers 200 237 IPR036236 -
Tpr2g2228 314 PANTHER ZINC FINGER PROTEIN WIP6 4 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2228 Tpr-Chr2 26682449 26684038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2228 13 284 C2H2 Transcription Factor Family AT1G13290 64.469 5.97e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g2228 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2228 - - aprc:113870355 436.032