LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g2225	ATGGATGGAGGTAGTTGCATAGATGAAAGCACCACCACCGAATCACTTTCCATAACAATACCACCAATGAAGAAACTGTCGACGCCGCCTCCGAACAGCCTATGCCGCGTCGGTAGCGGCGCGAGCGCGGTCGTGGACTCCGACGGCAGCGGCGTTGGAGAAGCCGAGTCACGGAAGCTTCCCTCATCCAAGTACAAAGGCGTGGTGCCACAACCAAACGGCCGTTGGGGAGCACAGATTTATGAAAAGCATCAGCGCGTGTGGCTTGGTACCTTTAACACAGAAGATGAAGCTGCAAGAGCTTATGACGTCGCAGCGCAACGGTTCCGCGGAAAAGACGCTGTAACTAACTTCAAACCACTCTCCAATGATGACAACGACGACATGGAAGTCGAGTTTCTTAACTCGCATTCCAAGTCAGAGATCGTTGACATGTTAAGAAAACACACATACAATGACGAGTTAGAACAGAGTAAGCGCAGCCGTGGCTTTATCAACAGAAGAAGCCACGGAGGCCTAAACTATTCTAACCTCGCCAGTTTCCAATCCAGCGAGAAAAAGGCGCGTGAGGATCTATTCGAGAAGGTTGTTACTCCCAGCGACGTCGGGAAACTAAACAGGCTAGTTATACCGAAACAACACGCTGAGAAGCATTTTCCGTTACAGAAAGCTGTCGATTGCGGCACTGATGGAAGGGCCGCAGCGACGGCTGCAGGGAAGGGAGTGCTTTTAAATTTTGAAGACGTTGGAGGGAAAGTATGGCGGTTTAGATACTCTTATTGGAACAGTAGCCAAAGCTACGTTCTAACTAAAGGATGGAGCCGGTTCGTTAAAGAGAAGAATCTGAAAGCCGGTGATACGGTTTGTTTTCAACGGTCTACTACTGGACCGGATAAACAGCTCTTTATTGATTGGAAAGCAAGAAAGAATGTTAATGAAGTTGGATTGTTTGTTCCGGTTGGACCGGTTGTTGAGTCGGTTCAGATGGTTCGGTTATTTGGGGTTAATATTTTGAAACTCCCTGGATCCGATGTTAATAATAATGGTAATGCTATTGCTGAATTATGCATTAATGGAAAAAGGAGGGAGATGGAAATGTTTACTTTGGATTCTTGCAAGAAGCCTAAGATTATTGGAGCTTTGTAA	1146	0.4695	MDGGSCIDESTTTESLSITIPPMKKLSTPPPNSLCRVGSGASAVVDSDGSGVGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNTEDEAARAYDVAAQRFRGKDAVTNFKPLSNDDNDDMEVEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGFINRRSHGGLNYSNLASFQSSEKKAREDLFEKVVTPSDVGKLNRLVIPKQHAEKHFPLQKAVDCGTDGRAAATAAGKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSTTGPDKQLFIDWKARKNVNEVGLFVPVGPVVESVQMVRLFGVNILKLPGSDVNNNGNAIAELCINGKRREMEMFTLDSCKKPKIIGAL*	382

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g2225	381	ProSiteProfiles	B3 DNA-binding domain profile.	193	308	IPR003340	GO:0003677
	Tpr2g2225	381	SMART	rav1_2	64	125	IPR001471	GO:0003700\|GO:0006355
	Tpr2g2225	381	Pfam	B3 DNA binding domain	193	305	IPR003340	GO:0003677
	Tpr2g2225	381	ProSiteProfiles	AP2/ERF domain profile.	64	119	IPR001471	GO:0003700\|GO:0006355
	Tpr2g2225	381	SUPERFAMILY	DNA-binding pseudobarrel domain	192	296	IPR015300	-
	Tpr2g2225	381	SMART	B3_2	193	309	IPR003340	GO:0003677
	Tpr2g2225	381	Pfam	AP2 domain	63	111	IPR001471	GO:0003700\|GO:0006355
	Tpr2g2225	381	PRINTS	Ethylene responsive element binding protein signature	65	76	IPR001471	GO:0003700\|GO:0006355
	Tpr2g2225	381	PRINTS	Ethylene responsive element binding protein signature	85	101	IPR001471	GO:0003700\|GO:0006355
	Tpr2g2225	381	Gene3D	-	187	315	IPR015300	-
	Tpr2g2225	381	CDD	B3_DNA	192	296	IPR003340	GO:0003677
	Tpr2g2225	381	Gene3D	AP2/ERF domain	63	120	IPR036955	GO:0003700\|GO:0006355
	Tpr2g2225	381	CDD	AP2	63	118	IPR001471	GO:0003700\|GO:0006355
	Tpr2g2225	381	MobiDBLite	consensus disorder prediction	1	58	-	-
	Tpr2g2225	381	SUPERFAMILY	DNA-binding domain	63	119	IPR016177	GO:0003677
	Tpr2g2225	381	MobiDBLite	consensus disorder prediction	1	22	-	-
	Tpr2g2225	381	PANTHER	AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR	1	381	-	-
	Tpr2g2225	381	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	1	381	IPR044800	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g2225	Tpr-Chr2	26634873	26637055	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g2225	5	381	B3 DNA Binding Superfamily	AT1G25560	59.335	3.53e-140	401

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-RAV	Tpr2g2225		B3	2.4e-28	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g2225	K09287		-	gmx:100801107	551.206