Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2217 ATGGCTGGGCCATCATGGTTGGTTGACAAAAGTAGAATTGCAACCAAAATAAAATGTGCATCAGGAGCATGTGATCCGAAAAGTATTACATGGAAAAGCAATCCTACCAAGACTTGCCCAAATTGTCAGCATGTTATTGATAATAGTAATCTTGCTAAAGAGTGGCCGGGCTTACCAAAAGGTGTTAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGTAGGAAATTTACAACCTCATCCTTTCGTAGATGAGTTTATTATTACTCTTGAAGTGGATGATGGAATTTGTTACACTCATCCTCAAAACTTACCTGGTGTAAAGCAAGATGGAAATGCAACCCACTTTTTCCACAGAGCAATTAAGGCTTACAATACTGGCACACGAAAGCGCCGAAAAATACATGATCAGGATTTTGGTGATGTCCGCTGGCATAAAACTGGAAGAACTAAACCAGTAATCTTGAATGGGGCTCAAAAAGGCTGTAAAAAGATTATGGTTCTGTATATGAGCAGTGCGGGGGGAGGAAAAGCTGAGAAAACGAATTGGGTTATGCATCAATATCATTTAGGAACGGAAGAGGAAGAAAAGGACGGGGAATTTGTTATCTCTAAAGTGTTTTACCAGCAGCAGCATGTCAAATTGGGTGATATAGATGAACAGGATATAACTGAAGCCGCCGAAGAAACAATCATAAAAGTGGATCCGGTTACTCCCAAATCGGTGACTCCTGAGCCTCCTCACAATGAAAGGCAGTATTCAGATGTTGATCTAGGATATGAAACACTTGCCATTCCTCAGATTCAGATGAATTGTCTGGATGAAATACAAGCTGATTGTGAAGAGCATGCAAAAGAGGATCTATCAGTGGTAGAAACTCAACATAATGAAGTGACAGAAGATAATGCCGAAGAAGGCCAAAAATGGTGGGACAGTGAATCACAAAATCTGTTGGATTCACAGCAACTGGTTGAAGCATTAGCCTTGTGCGACGATTTACTTCATAGCCAATCTCCCACTAGGGATGGGGAACATGAAGAAAATAAGAACCAACTTGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAGCATCTGAAGAAGGATATCGAAGACTGTCAAAATCTTGTCCTTGACCCTGTAAATTTAGAGCTCGACACACCATCTACGGAGTTACGACTAAGTCAATTGGAATTTGGTTCGCAAGATAGCTTTATAGCCTGGGGTTACAACAAGGACGTAAGGTAA 1266 0.4084 MAGPSWLVDKSRIATKIKCASGACDPKSITWKSNPTKTCPNCQHVIDNSNLAKEWPGLPKGVKFDPSDQEIIWHLLAKVGVGNLQPHPFVDEFIITLEVDDGICYTHPQNLPGVKQDGNATHFFHRAIKAYNTGTRKRRKIHDQDFGDVRWHKTGRTKPVILNGAQKGCKKIMVLYMSSAGGGKAEKTNWVMHQYHLGTEEEEKDGEFVISKVFYQQQHVKLGDIDEQDITEAAEETIIKVDPVTPKSVTPEPPHNERQYSDVDLGYETLAIPQIQMNCLDEIQADCEEHAKEDLSVVETQHNEVTEDNAEEGQKWWDSESQNLLDSQQLVEALALCDDLLHSQSPTRDGEHEENKNQLGLSVYAQLGPEHLKKDIEDCQNLVLDPVNLELDTPSTELRLSQLEFGSQDSFIAWGYNKDVR* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2217 421 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 415 IPR044799 GO:0003700
Tpr2g2217 421 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Tpr2g2217 421 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Tpr2g2217 421 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 415 - -
Tpr2g2217 421 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Tpr2g2217 421 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2217 Tpr-Chr2 26553501 26558165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2217 5 223 NAC Transcription Factor Family AT4G28500 52.444 1.99e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr2g2217 NAM 5.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2217 - - gmx:100799488 689.878