Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2178 ATGAGAAACAAGTTGAAACTTGCATTCGTGGCCAGTGATTCTCAAAGGAAGATAACCTACAACAAGAGAAAAAAGAGTCTAACGAAAAAGATCGATGAACTCACTACCCTCTGTGGGGTTGATGCTTGTGTTATCATTTTTAGCAATTTTCATTTAGACCCGGAGATCTGGCCTTCCCAATCGTCGGAGGTCCAAAGGATTTTAACGAAATTCAAAACTTATTCTGAATTTGAGCAGGGTAAGAAGAAGCTGAGCCACGAGAGCTATTTGATGAAGAGGATAACCAAGTCCAGAGAGCAATTGGCGAAATTGGAGAAGAACAATGGAGAATTGCAGAAGTCGTTGATCTTGTATCAATGTCTTGCCAATGAAATTCCAGTCGACACTCTGAACTTAGATGTTTTGAATGATGTTGATTGTGAAATTAATCGGAAGTTAGCGGAAATTGCTTCAAAAGAAAATGAAGTAGACCCAAATGCAACCTCTTAG 489 0.3926 MRNKLKLAFVASDSQRKITYNKRKKSLTKKIDELTTLCGVDACVIIFSNFHLDPEIWPSQSSEVQRILTKFKTYSEFEQGKKKLSHESYLMKRITKSREQLAKLEKNNGELQKSLILYQCLANEIPVDTLNLDVLNDVDCEINRKLAEIASKENEVDPNATS* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2178 162 Gene3D - 13 107 IPR036879 GO:0003677|GO:0046983
Tpr2g2178 162 CDD MADS_SRF_like 1 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr2g2178 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 48 IPR002100 GO:0003677|GO:0046983
Tpr2g2178 162 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 153 - -
Tpr2g2178 162 Coils Coil 94 114 - -
Tpr2g2178 162 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tpr2g2178 162 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 2 153 - -
Tpr2g2178 162 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Tpr2g2178 162 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Tpr2g2178 162 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Tpr2g2178 162 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Tpr2g2178 162 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Tpr2g2178 162 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2178 Tpr-Chr2 26112206 26112694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2178 2 149 Type I MADS-box Gene Family AT5G48670 42.568 8.33e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr2g2178 SRF-TF 7.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2178 - - mtr:MTR_3g466830 213.001