Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2149 ATGGTGTTAAGTGGCAAGAGAGAAATTGAATCCTTAAAGACAAAAGATCGAGAACAAGTTGTAGTTATCAAGTTCCAAATTGTGCAAGAGCTCAACCAATTATTGTTTAATGACGATAATCTCCATACTCAGTCAAGTGTTGTTGAATCACCTCCATACTCAGATGATCTCACTTCGGCTGACAAGAACAATGTAAAAAAGAAAGTGAAGCATTGGAATCATGATGAACATAGGTTATTTCTGCAAGGGCTCGAGAAATATGGTCGTGGAAATTGGAAAAAAATATCAAAACATGTTGTTACAAAAACTCATACACAAGTTGCTAGTCATGCTCAAAAATACTTCCTTCGTCAAGATGATGCAATGAAGAAGAGGAAACGAACAAGCATTCATGACATAACCGAATGGAATGAAAATGTTCAGCCTCTTGTATATAAGGACTACAATTCAACTCCTCCTCCTCCTAATGTTGAAATCCATCAAATTCATGACACAACAGAATTGAATGGAAATTTCCACCCTCTTCTTTATAAGGACTACAATCCAACTCCTACTCCAAATGTTGAAATACATCAAATCCATGACACAATCGAATGGAATGGAATTTTTCACCCTCTTCTTTATAAGGACTACAATCAAACTCCTCCTCCAAATGTTGAAATGCCTCAAATTCATAAGGAGTTTTTATTTCCTTGTATTGTTTAG 705 0.356 MVLSGKREIESLKTKDREQVVVIKFQIVQELNQLLFNDDNLHTQSSVVESPPYSDDLTSADKNNVKKKVKHWNHDEHRLFLQGLEKYGRGNWKKISKHVVTKTHTQVASHAQKYFLRQDDAMKKRKRTSIHDITEWNENVQPLVYKDYNSTPPPPNVEIHQIHDTTELNGNFHPLLYKDYNPTPTPNVEIHQIHDTIEWNGIFHPLLYKDYNQTPPPNVEMPQIHKEFLFPCIV* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2149 234 Pfam Myb-like DNA-binding domain 71 115 IPR001005 -
Tpr2g2149 234 SUPERFAMILY Homeodomain-like 65 120 IPR009057 -
Tpr2g2149 234 ProSiteProfiles Myb-like domain profile. 64 115 IPR001005 -
Tpr2g2149 234 PANTHER TRANSCRIPTION FACTOR SRM1 28 142 - -
Tpr2g2149 234 SMART sant 68 117 IPR001005 -
Tpr2g2149 234 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 67 118 IPR006447 GO:0003677
Tpr2g2149 234 PANTHER TRANSCRIPTION FACTOR KUA1 28 142 - -
Tpr2g2149 234 Gene3D - 70 120 - -
Tpr2g2149 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 119 IPR017930 -
Tpr2g2149 234 CDD SANT 72 115 IPR001005 -
Tpr2g2149 234 ProSiteProfiles SANT domain profile. 72 119 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2149 Tpr-Chr2 25726054 25727247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2149 72 117 EF-hand Containing Proteins AT3G07740 39.130 9.84e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr2g2149 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2149 - - mtr:MTR_5g075790 110.923