Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2133 ATGGGTAGAGGAAAGGTAGAGCTGAAGAGAATTGAAAACAAAATAAATCGTCAAGTAACATTTGCAAAGAGAAGAAATGGGTTACTCAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATTATTTTCTCCAACCGTGGAAAGCTCTATGAATTCTGCAGTGGTACTAGCATGGCCAAAACACTCGAACGGTATCAAAGATGCAGTTATGGAGCCTTGGAACTACAGCATCAACCTGAAATTGAAACACAGAGGCGTTATCAAGAATATCTGAAGCTAAAATCAAAAGTTGAGTCACTACAGCAAACACAAAGGAACATTCTTGGAGAAGAATTGGAGCACTTAGATGTTATGGATCTGGAGCAGCTAGAACGCCAGTTAGACTCTTCTTTAAAGACAATCAGGTCAAACAAGACACAGCATATGCTTAATCAACTTTCAGATTTGCAAAGAAAGGAAGAGATGCTAATGGAAACAAATAATATCCTGAGGAACAAGTTGGAGAATATTAATGAGACCCTTCAACCAACATGGGAATCTAGGGGGCAAAATGCACCCTATAGCAGCCACCCTCACCAATCAGAGGGATACAATGAGAAAGAACGTGGCAATAGTACATTGCAAATTGGCTATAATACTTCAGTGTTAAATAATGAATCAAGAGAAGCTGCAGGAACCTCATCTCAGAATGCTAATGAATTTATGCAAGGATGGATGAACTGA 738 0.3916 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGTSMAKTLERYQRCSYGALELQHQPEIETQRRYQEYLKLKSKVESLQQTQRNILGEELEHLDVMDLEQLERQLDSSLKTIRSNKTQHMLNQLSDLQRKEEMLMETNNILRNKLENINETLQPTWESRGQNAPYSSHPHQSEGYNEKERGNSTLQIGYNTSVLNNESREAAGTSSQNANEFMQGWMN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2133 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr2g2133 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr2g2133 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr2g2133 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr2g2133 245 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Tpr2g2133 245 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Tpr2g2133 245 MobiDBLite consensus disorder prediction 225 245 - -
Tpr2g2133 245 MobiDBLite consensus disorder prediction 185 205 - -
Tpr2g2133 245 Coils Coil 151 178 - -
Tpr2g2133 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr2g2133 245 PANTHER MADS BOX PROTEIN 1 230 - -
Tpr2g2133 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g2133 245 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g2133 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr2g2133 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr2g2133 245 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Tpr2g2133 245 Coils Coil 125 145 - -
Tpr2g2133 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2133 Tpr-Chr2 25481294 25500399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2133 1 244 MADS-box Gene Family AT5G15800 55.939 2.95e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr2g2133 K-box 5.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2133 K09264 - gmx:100811049 408.683