Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2131 ATGGAATCTTGGAGTTACATCCCAGAAGAGAGAAGCTATTTGTTTTCTGATGAAATGGACTTTTCACTTGATGCTTTTATGAGAAGTAGAAAACCATTGGTTGAATGGGAGAACAAATCTTCGTGTAACTTTGAAAGAGATGGATTTAAAGGTATGGAGTTTGTGGACTTAGGATTTCCCGATTTTCTGCAAAAGTCTTTTCTTAGTAGCAAGCCTATGGAAACATCTAGCTGTGAGCTGGATAGTAATAATTCTAGTAAAAGAGGGAATTCCTCTTCACATGTTATTGCTTTTGATTCATCTTTTGGTGAAGAAGATTCCGAGCCAAAGCATTTAAGTTCGTCTCTAGTTGAATTGAAAAATCGTGATTCTTCGTCGATTGATCTGAAGCTAGGGAGATTAGCAGATTTTCAAGGTGCAAACATTGACAGAAATGCAAAAGAATTCACTTCTGCAGCTATGCCTCAAACCTCGCTAGCTAAGAGAGCTCGCACCTCTAGCTTACCTGCTCAGGCTCCTGTATGTCAAGTTTATGGTTGTAATATGGACCTTAGCTCCTCGAAAGATTACCACAAAAGGCATAGAGTTTGTGATGTTCATTCCAAGACAGCTAAAGTTATTGTGAATGGCATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTTCATTTGGTAGCTGAATTCGATGATGGTAAACGTAGTTGTCGCAGACGTCTAGCTGGACACAACGAACGGCGAAGGAAACCTCAGTTTGATTACATGACTAGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACTACCAACTTTTCCTTTCAAGACATATTTATCAAACTTGAAGAGGAGCCAATTTGCAGCCCTCAAATAGAACCGTCGGCCACACTTGGTCACGAGTTATCTACCCGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGAATCCTTCACGCCACGCAGCAGGAAATGCATTACCAACTTCTCGTACTTTTCGGGACGTCCACACACAAGATAGAGACGACCAAGTTTCTGAAACGCTGTTGATGATAAGCTCTGTGGATAAACATGAACAAAATGAGTCTTTTCCATCTGGGATAAACTCTAAGGAAGTTATCAAATCTGAAAATGGAGGATCCACTGTTGATTTGTTTCAACTGTCTTCGCATCTTCAAAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTAAAGTGGGAAGATGAGGATTGCTCTTTCCCAACAGTGTAA 1242 0.4074 MESWSYIPEERSYLFSDEMDFSLDAFMRSRKPLVEWENKSSCNFERDGFKGMEFVDLGFPDFLQKSFLSSKPMETSSCELDSNNSSKRGNSSSHVIAFDSSFGEEDSEPKHLSSSLVELKNRDSSSIDLKLGRLADFQGANIDRNAKEFTSAAMPQTSLAKRARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHRVCDVHSKTAKVIVNGIEQRFCQQCSRFHLVAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILQSYQGTTNFSFQDIFIKLEEEPICSPQIEPSATLGHELSTRALSLLSAQSQNPSRHAAGNALPTSRTFRDVHTQDRDDQVSETLLMISSVDKHEQNESFPSGINSKEVIKSENGGSTVDLFQLSSHLQRVEQQRNSVLVKWEDEDCSFPTV* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2131 413 Pfam SBP domain 175 248 IPR004333 GO:0003677
Tpr2g2131 413 Gene3D - 166 236 IPR036893 GO:0003677|GO:0005634
Tpr2g2131 413 SUPERFAMILY SBT domain 173 254 IPR036893 GO:0003677|GO:0005634
Tpr2g2131 413 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 297 410 - -
Tpr2g2131 413 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 42 290 - -
Tpr2g2131 413 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 297 410 IPR044817 GO:0003677
Tpr2g2131 413 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 290 IPR044817 GO:0003677
Tpr2g2131 413 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2131 Tpr-Chr2 25422096 25426789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2131 127 411 SBP-box Gene Family AT1G69170 42.229 9.55e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr2g2131 SBP 2.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2131 - - mtr:MTR_5g046670 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2131 2 25422096 25426789 Tpr2g2131 2 25422096 25426789 ECH