Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2126 ATGAACCAAGAAGAGAAAGTTACCATGGACTTGATTCCAGCTACTGATCAACACCTTTGTTATGTTCGTTGCAACTTCTGTAACACTGTTCTCGCTGTTGGAATACCATGCAAGAGGCTGTTAGATACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTCACTACAAGACCACCAAATTCCAAAACTCCAACTGTTGATCATACCCTAACACTCCAGGGGATTTACAGTAGCAAAAAGGGTCATCCATCATCATCTTCATCTTCTTCACCAACTACTTCAACTGACTCATTGTCTCCTAGACCACCACCATTTGTTGTCAAACCTCCTGAGAAGAAACATCGTCTCCCTTCTGCTTACAACCGTTTCATGAAAGAAGAGATACAGCGCATCAAAGCAGCCAATCCTCAGATCCCACATCGAGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAGGTTTGTCCCAAATTCACCAACCAGTTCACTTTCTGCAACTAAAAGGAGCCTTGGATGA 525 0.4381 MNQEEKVTMDLIPATDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPNSKTPTVDHTLTLQGIYSSKKGHPSSSSSSSPTTSTDSLSPRPPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARFVPNSPTSSLSATKRSLG* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2126 174 Gene3D High mobility group box domain 109 167 IPR036910 -
Tpr2g2126 174 SUPERFAMILY HMG-box 100 156 IPR036910 -
Tpr2g2126 174 MobiDBLite consensus disorder prediction 76 103 - -
Tpr2g2126 174 MobiDBLite consensus disorder prediction 76 116 - -
Tpr2g2126 174 PANTHER PROTEIN CRABS CLAW 7 169 - -
Tpr2g2126 174 PANTHER PROTEIN YABBY 6-RELATED 7 169 IPR006780 GO:0007275
Tpr2g2126 174 Pfam YABBY protein 16 157 IPR006780 GO:0007275
Tpr2g2126 174 CDD HMGB-UBF_HMG-box 118 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2126 Tpr-Chr2 25368248 25370760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2126 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 65.698 1.91e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Tpr2g2126 YABBY 2.6e-53 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2126 K25796 - gmx:100819079 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2126 2 25368248 25370760 Tpr2g2126 2 25368248 25370760 ECH