Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2108 ATGCCAAGCAAATCACAGGTTATTACATGCAAAGCTGCAATATGTTGGGGGGTAGGAAAAGCAGTGACAGTGGAAGACATACAAGTAGATCCACCAAAGGCAACAGAAGTTAGAGTTAATATGCTTTGTGCTAGTCTCTGCCACACAGACATCTCAAGCATTCAAGGATTTCCACATAATAAATTCCCCCTAGCACTTGGACATGAAGGAGTTGGTGTTATAGAGAGTGTTGGTGATGAAGTGACAAATCTTAAAGAAGGAGATATTATAATTCCAACATATGTAGGGGAGTGTCAAGAATGTGAGAATTGTGTTTCAGGGAAAACAAATCTTTGTCTTACATACCCTGTGAGATTCACTGGCCTAATGCCTGATAATACTTCAAGGTTGTCGATTCGAGGCAAGAGACTATATCATGTTTTGAGTTGTGCTACATGGTCAGAGTATGTGGTTGTTGATGTCAACTACCTTCTCAAAGTTGATCCAGCCATTAATTTAGCATATGCTAGTTTCATCTCATGTGGGTTTGCAACTGGTTATGGAGCTGCTTGGAAGGAAGCTAAGGTTAAAAGTGGTTCAAGTGTTGCTGTTTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGTGGAGCCAAAATGATGGGAGCAAGTAAGATAATTGGGGTTGACAAAAATGAGATGAAGAGAGAAAAAGCAGAAGCTTTTGGACTAACACACTTTATAAATCCAAGTGATTCTAATAAATCTGCTTCAGAATTGATCAAAGAATTGAGTGGTGGAATGGGTGTGGATTACTCTTTTGAGTGCACTGGAGTTCCTTCTTTACTTAATGTATCAGTTGAAGTCACAAAATTAGGAACAGGTAAAACAATGGCTATTGGTACAGGAGTTGAAAATATAGTACCATTAGATCTTCTTGCCATTATATTTGGTAGAAAATTGAAAGGTTCTATTTTTGGAGGACTGAAAACCACATCAGACCTTTCCATCATAGCTGACAAATGCCAGAAAGAGGAATTCCCTCTTCAAGAACTGTTCACCCATGAGGTACCATTGATAGAAATAAACAAGGCATTTGAGTTATTGAAGCAACCTAATTGTGTCAAAGTTGTCATCAAGATGATGTGA 1128 0.3865 MPSKSQVITCKAAICWGVGKAVTVEDIQVDPPKATEVRVNMLCASLCHTDISSIQGFPHNKFPLALGHEGVGVIESVGDEVTNLKEGDIIIPTYVGECQECENCVSGKTNLCLTYPVRFTGLMPDNTSRLSIRGKRLYHVLSCATWSEYVVVDVNYLLKVDPAINLAYASFISCGFATGYGAAWKEAKVKSGSSVAVFGLGAVGLGAISGAKMMGASKIIGVDKNEMKREKAEAFGLTHFINPSDSNKSASELIKELSGGMGVDYSFECTGVPSLLNVSVEVTKLGTGKTMAIGTGVENIVPLDLLAIIFGRKLKGSIFGGLKTTSDLSIIADKCQKEEFPLQELFTHEVPLIEINKAFELLKQPNCVKVVIKMM* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2108 375 Pfam Zinc-binding dehydrogenase 202 322 IPR013149 -
Tpr2g2108 375 SMART PKS_ER_names_mod 17 372 IPR020843 GO:0016491
Tpr2g2108 375 PANTHER ALCOHOL DEHYDROGENASE 5 373 - -
Tpr2g2108 375 SUPERFAMILY GroES-like 4 190 IPR011032 -
Tpr2g2108 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Tpr2g2108 375 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Tpr2g2108 375 Gene3D - 179 317 - -
Tpr2g2108 375 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 373 - -
Tpr2g2108 375 Gene3D - 13 369 - -
Tpr2g2108 375 CDD liver_alcohol_DH_like 8 373 - -
Tpr2g2108 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 335 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2108 Tpr-Chr2 25182543 25186158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2108 35 366 Monolignol Biosynthesis Gene Families AT2G21730 27.405 1.47e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2108 K00121 - gmx:100798341 619.002