Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2069 ATGTCAAGCGGAAGGAAAAGCCAAGGTCGCAAAAAGATTGAAATGAAAAGGATTACGAATGAGAGAAACATGCAAGTGACATTTTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTAGCACTCTTTGTGGTGCAGATGTTGCTCTTGTTGTGTTTTCTCCTGGTGAGAAGGCATTTTCTTTTGGTCACCCCAATGCTGACACGGTCATTGATCGTTATCTATCACAACTCCCATCTCAAAATAATGGCACCGTGCGACTCATTGAGGCCCGACGTAACGCCAACGTGTCTGAGCTCCATTCCCAGCTAACTCGGCTCAACGATGCGTTAGACATCGAGAAGAGCCGTAGGGATGAATTGAGTCACATGAACAAGATGACTGAGACTCAGTATTGGTGGGCTTGTCCCTTTGATGGGATGAATTTTAGCCAACTTGGATTACTGAAAAATGCTTTAGCGGAACTAAAGAAACGTATTCCTGAACATGCTAATGAGCTTGTCAATCAGGGTGCTGCCACCCAAACCATGACATCTTTTGCTGGAAATGGTTCATTTTCTAACATGTATGTCCATCATCTCCCAAATTCTCAATACAGTCAAATGTTTCCGGAACAACCTTTTCAGGACCCTATGTTGCAACATAATTTGTTTAATTTCAACAATATTGGAGGAGGAGGAGGAGGAGGAGAAGAAGGAGGGTATGGACCCCCAAGATTCTTGTGA 732 0.4426 MSSGRKSQGRKKIEMKRITNERNMQVTFSKRRSGLFKKASELSTLCGADVALVVFSPGEKAFSFGHPNADTVIDRYLSQLPSQNNGTVRLIEARRNANVSELHSQLTRLNDALDIEKSRRDELSHMNKMTETQYWWACPFDGMNFSQLGLLKNALAELKKRIPEHANELVNQGAATQTMTSFAGNGSFSNMYVHHLPNSQYSQMFPEQPFQDPMLQHNLFNFNNIGGGGGGGEEGGYGPPRFL* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2069 243 PANTHER MADS BOX PROTEIN 7 183 - -
Tpr2g2069 243 Coils Coil 148 168 - -
Tpr2g2069 243 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr2g2069 243 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr2g2069 243 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr2g2069 243 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tpr2g2069 243 Gene3D - 88 181 - -
Tpr2g2069 243 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Tpr2g2069 243 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tpr2g2069 243 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tpr2g2069 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr2g2069 243 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Tpr2g2069 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2069 Tpr-Chr2 24782732 24783553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2069 5 188 Type I MADS-box Gene Family AT5G60440 47.059 1.45e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr2g2069 SRF-TF 4.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2069 - - mtr:MTR_1g105905 259.225