Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2059 ATGTCGAGCGGAAAGAAAACCCAAGGTCGCCAAAAGGTTGAGATGAAAAGGATGACCAACGAGAGCAACCTGAAAACGACTTTCTCGAAGCGCCGTAGCGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACTCTTTGTGGTGCTGATGTTGCTCTAGTTGTATTTTCACCTGGTAAAAAAGCATATTCCTTTGGTCACCCCAATGTTGATACGGTCATAGATCGTTATATCTCACGGGTTCCGCATCAAAACAATGGAACCGCGGGATTAATCATTGAGGCTCGACGTAATGCCAACGTTCATGAGCTCAATTCTCAGCTGACACAGATCAACAACATATTAGACATCGAGAAAGGGCGTATGGATGAGTTGAGTCAAATTCACAATATGAATGAGGCTCAGTATTGGTGGGCTCGCTCCTTTGATGGGATGAATTGGGATCAACTTGAATTTTTGAAAAATAAATTTGAGAATTTGAAGAATCTTATTGCTCAACATCCTAATAGGCATGTAATTCAGGGTGCTCCAACCCAAACTCTACCATTTTTTGGTGGAAATGCTTCATCCTCTAACATGCCTCTCCACCATCAACCAAATCCTAACCAAGCTCAAATTATTCTTTCGGAACAGATTTTTGAGAACCCTATGTTGCAACCACATTTATTTGGTTTCAACAATATGGGAGGAGGAGGAGGAGGAGGAGGATATGGACCTTCCTGA 720 0.4264 MSSGKKTQGRQKVEMKRMTNESNLKTTFSKRRSGLFKKASELCTLCGADVALVVFSPGKKAYSFGHPNVDTVIDRYISRVPHQNNGTAGLIIEARRNANVHELNSQLTQINNILDIEKGRMDELSQIHNMNEAQYWWARSFDGMNWDQLEFLKNKFENLKNLIAQHPNRHVIQGAPTQTLPFFGGNASSSNMPLHHQPNPNQAQIILSEQIFENPMLQPHLFGFNNMGGGGGGGGYGPS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2059 239 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Tpr2g2059 239 MobiDBLite consensus disorder prediction 1 26 - -
Tpr2g2059 239 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr2g2059 239 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr2g2059 239 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr2g2059 239 PANTHER MADS BOX PROTEIN 8 166 - -
Tpr2g2059 239 CDD MADS_MEF2_like 9 76 IPR033896 GO:0000977|GO:0045944
Tpr2g2059 239 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 166 - -
Tpr2g2059 239 Gene3D - 90 169 - -
Tpr2g2059 239 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Tpr2g2059 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr2g2059 239 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tpr2g2059 239 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2059 Tpr-Chr2 24673232 24674191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2059 5 188 Type I MADS-box Gene Family AT5G60440 50.532 1.24e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr2g2059 SRF-TF 7.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2059 - - mtr:MTR_1g105905 268.47