Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2048 ATGGAAATAGACAGTGAAAACATCAAAGAGAAGGATCTATTCAAAGCAGCTGAAGAAGGAGATTCTTCAATATTCGAATCATTATCCCCTCAATCACTCTCAAAATCACTCTCTCTAACAAACGAAGATGCTCGCTCACTTCTTCATGTTGCCGCTTCTTCTGGTCACTCTAAGGTTGTGAAGATATTGTTGTCTTCTGATGCGTCTGCTGAGGTGATAAATAGTAGCGATGAAGAAGGGTGGGCACCGCTTCATTCTGCTGCCAGTATTGGAAATTTGGAGATATTGGAGGCTTTGTTGAACAAAGGAGCTGATGTTAATATAAAAAACAATGGGGGACGCACGGCCTTACACTATGCAGCCAGCAAAGGTCGGATGAAGATTGCTGAAAAACTCATCTCTCATAATGCCAAGATTAATATAAAGGACAAGGTTGGTTGCACCCCATTGCATCGGGCAGCTAGCACCGGGAATTCTGAGCTGTGTGAATTTTTGATTGAAGAAGGAGCAGATGTTGATGCCGTTGACAGAGCTGGTCAAACTCCTCTAATGAATGCCGTGATTTGTTATAACAAAGAGGTAGCACTTCTTCTTATAAGGCATGGAGCAGATGTGGATGTAGAGGACAAGGAAGGGTACACCGTGCTTGGTCGAGTTACTGATGATGGGTTTAGAACAATATTGATTGATGCTGCCAAGACCATGCTTGAGTGA 714 0.43 MEIDSENIKEKDLFKAAEEGDSSIFESLSPQSLSKSLSLTNEDARSLLHVAASSGHSKVVKILLSSDASAEVINSSDEEGWAPLHSAASIGNLEILEALLNKGADVNIKNNGGRTALHYAASKGRMKIAEKLISHNAKINIKDKVGCTPLHRAASTGNSELCEFLIEEGADVDAVDRAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRVTDDGFRTILIDAAKTMLE* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2048 237 Gene3D - 2 146 IPR036770 -
Tpr2g2048 237 ProSiteProfiles Ankyrin repeat region circular profile. 145 177 - -
Tpr2g2048 237 ProSiteProfiles Ankyrin repeat region circular profile. 178 210 - -
Tpr2g2048 237 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C 73 223 - -
Tpr2g2048 237 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C 13 116 - -
Tpr2g2048 237 SMART ANK_2a 145 174 IPR002110 GO:0005515
Tpr2g2048 237 SMART ANK_2a 79 108 IPR002110 GO:0005515
Tpr2g2048 237 SMART ANK_2a 43 72 IPR002110 GO:0005515
Tpr2g2048 237 SMART ANK_2a 112 141 IPR002110 GO:0005515
Tpr2g2048 237 SMART ANK_2a 178 207 IPR002110 GO:0005515
Tpr2g2048 237 ProSiteProfiles Ankyrin repeat profile. 178 210 IPR002110 GO:0005515
Tpr2g2048 237 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
Tpr2g2048 237 Gene3D - 147 235 IPR036770 -
Tpr2g2048 237 SUPERFAMILY Ankyrin repeat 13 220 IPR036770 -
Tpr2g2048 237 PRINTS Ankyrin repeat signature 113 128 IPR002110 GO:0005515
Tpr2g2048 237 PRINTS Ankyrin repeat signature 161 175 IPR002110 GO:0005515
Tpr2g2048 237 ProSiteProfiles Ankyrin repeat profile. 145 177 IPR002110 GO:0005515
Tpr2g2048 237 ProSiteProfiles Ankyrin repeat region circular profile. 43 74 - -
Tpr2g2048 237 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 73 223 - -
Tpr2g2048 237 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 13 116 - -
Tpr2g2048 237 Pfam Ankyrin repeats (3 copies) 13 110 IPR002110 GO:0005515
Tpr2g2048 237 Pfam Ankyrin repeats (3 copies) 146 209 IPR002110 GO:0005515
Tpr2g2048 237 ProSiteProfiles Ankyrin repeat profile. 112 144 IPR002110 GO:0005515
Tpr2g2048 237 Pfam Ankyrin repeat 113 141 IPR002110 GO:0005515
Tpr2g2048 237 ProSiteProfiles Ankyrin repeat region circular profile. 112 144 - -
Tpr2g2048 237 ProSiteProfiles Ankyrin repeat region circular profile. 79 111 - -
Tpr2g2048 237 ProSiteProfiles Ankyrin repeat profile. 43 75 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2048 Tpr-Chr2 24548361 24552982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2048 16 202 Miscellaneous Gene Families AT1G07710 36.458 2.99e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2048 K06694 - gmx:100499930 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2048 2 24548361 24552982 Tpr2g2048 2 24548361 24552982 ECH