Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2031 ATGAACACCAATAATAACTCACAATTACCGTTGGAGATTCCAATTGGAGACGCAATTTCCAGAATTCAATTTTCGCCTAACTCTAACAATCTTCTGATTTCATCTTGGGATTCTAATCTTCGTTTGTATGATGTCGATGCTTCGGTTCTTAGAGTTGAAGTTCCTTCAGAAGCTGCTCTTCTTGATTGTTGCTTCACAGATGATGATTCCGTTGCTTATGCGGCTGCTTCCGATGGATTCATCAGAAGGTATGACATGCATTCTGGAGTTATTGATCCAATGGGCAGTCACGATGACATGGCAACGTGCATTGGATATTCCGATGAAACATGTCTGTTAGTTACTTCTGGATTTGACAAGAAGTTATTGTCATGGGACATTCGCACGAAGAAATCTTTTTCATTGTCGATGACTCTAGATGCAGAGATCGACTCCATGTCTCTCAATGGGTTTAAGGTTACCATAGGCATTGGAGCATCTGCCCAGGTTTATGATTTACGCAAATTTGACAAACCAAATCTGTCAATGGAGCCTTGCAATGGTGCACAATTAAGATGTGTTAGTTCATTACCTTGTGCAGAAGGATTTGCAGTTGGATCAGTGGATGGACGGGTTGCATTGCAGGTTTCCTGTTCATCAAATTTAAATGACATTGGATATACATTCCGGTGTCATCCAAAATTAAAGGATGGTCAGCATCATTTGGCATCTGTGAACGACATTGCGTTCAGTCCACTTGTGCCTGGTGCATTTGTCACTGGTGATGATGAAGGATATGCTACCATATGGGATGCTCGTAGTAGGAAAAGACTACTTGAGTTTCCCAGGTACTCAAATAGTGTTGCATCCTTATCTTACAACCTTTTGGGACAGCTTCTAGCTGTAGCATCAAGTTATACTTACCAAGAAGCAAAAGAAATAGTAAAGCCTCCTCAAGTGTTTATCCATAAAGTGGACAACATTGATCTCGGATCAAAAAACATGTCAGACGAGGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCTTCAAAGACATATCCACAACAAGCTGGAACCATTCGCAAAAATGGTCACATTGTCATCAAAAACAGACCCTGCAAGGTAGTTGAAGTTTCAACTTCTAAAACTGGAAAACATGGACATGCTAAGTGTCACTTTGTTGGTATTGATATCTTCACTGGCAAAAAACTTGAAGATATTGTTCCTTCTTCTCATAACTGTGATGTTCCTCATGTTAATCGTACTGATTATCAGCTCATTGATATCTCAGAGGATGGATTTGTGAGTCTGCTGACTGAGAGTGGTGGTACTAAGGATGACCTTAAGCTTCCAACCGATGAAGCTCTGCTTTCGCAGATCAAGGATGGATTTGGTGAGGGTAAAGATCTGATTGTGTCTGTCATGTCTGCCATGGGTGAGGAGCAGATTTGTGGCCTTAAGGACATTGGTCCAAAGTAA 1461 0.4114 MNTNNNSQLPLEIPIGDAISRIQFSPNSNNLLISSWDSNLRLYDVDASVLRVEVPSEAALLDCCFTDDDSVAYAAASDGFIRRYDMHSGVIDPMGSHDDMATCIGYSDETCLLVTSGFDKKLLSWDIRTKKSFSLSMTLDAEIDSMSLNGFKVTIGIGASAQVYDLRKFDKPNLSMEPCNGAQLRCVSSLPCAEGFAVGSVDGRVALQVSCSSNLNDIGYTFRCHPKLKDGQHHLASVNDIAFSPLVPGAFVTGDDEGYATIWDARSRKRLLEFPRYSNSVASLSYNLLGQLLAVASSYTYQEAKEIVKPPQVFIHKVDNIDLGSKNMSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLKLPTDEALLSQIKDGFGEGKDLIVSVMSAMGEEQICGLKDIGPK* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2031 486 Gene3D - 1 328 IPR015943 GO:0005515
Tpr2g2031 486 PANTHER MRNA EXPORT FACTOR AND BUB3 6 325 - -
Tpr2g2031 486 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.3 6 325 - -
Tpr2g2031 486 Pfam WD domain, G-beta repeat 19 44 IPR001680 GO:0005515
Tpr2g2031 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 273 IPR001680 GO:0005515
Tpr2g2031 486 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 412 481 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tpr2g2031 486 Gene3D - 329 412 IPR014722 -
Tpr2g2031 486 CDD S1_eIF5A 413 483 - -
Tpr2g2031 486 Gene3D - 413 485 IPR012340 -
Tpr2g2031 486 SUPERFAMILY Nucleic acid-binding proteins 413 483 IPR012340 -
Tpr2g2031 486 SUPERFAMILY Translation proteins SH3-like domain 342 420 IPR008991 -
Tpr2g2031 486 ProSitePatterns Trp-Asp (WD) repeats signature. 113 127 IPR019775 -
Tpr2g2031 486 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 377 384 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tpr2g2031 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 135 IPR001680 GO:0005515
Tpr2g2031 486 SMART WD40_4 6 44 IPR001680 GO:0005515
Tpr2g2031 486 SMART WD40_4 87 126 IPR001680 GO:0005515
Tpr2g2031 486 SMART WD40_4 221 264 IPR001680 GO:0005515
Tpr2g2031 486 SMART WD40_4 46 85 IPR001680 GO:0005515
Tpr2g2031 486 TIGRFAM eIF_5A: translation elongation factor IF5A 344 478 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tpr2g2031 486 SMART eIF_5a_2 412 481 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tpr2g2031 486 SUPERFAMILY WD40 repeat-like 16 298 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2031 Tpr-Chr2 24381554 24394699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2031 328 486 Eukaryotic Initiation Factors Gene Family AT1G13950 88.050 7.69e-98 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2031 K02180 - pop:7498196 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2031 2 24381554 24394699 Tpr2g2031 2 24381554 24394699 ECH