Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2011 ATGAGTAAGATGCCAGTGTTGAAGACAGGAGCATGGACACCAGAAGAAGACAAGAAGCTTATAGCATATGTTACTCAACATGGCCACGGAAACTGGCATTCTTTGCCCTCCAGAGCAGGTCTGCTAAGATGTGGAAAGAGTTGCAGACGGAGGTGGATTAACTATCTGAGACCTGATTTAAAACGAGGAAACTTTAGCTTGGAGGAAGATCAAACTATTACTCAACTGCATGCTCTTCTTGGGAACAAATGGGCAACAATAGCAGCTCTCCTACCAAGGAGAACAGACAATGATATAAAGAATCATTGGAACACTAACATCAAGAAAAGACTTATCAAAATGGGGATAGATCCCATAACTCACAAACCAAAATCCAACATCAAAGACAATATCAATATTGCTCTCAAACACAAGGCTCAATGGGAGAGTGTTAGATTGGAAGCTGAAGCAAGATCATCAATGTTAAGCAAAGTTCAAACTCAACCATTAATATGTTCATCAAGTTCACCAAATTTTTCAATAACCAAACCCAACAATGCAATGGATAACATGTGTGCAATCATGGTTGCTAATGATGATGACCCTTTATATCCAAATATGCATTGCAATGTTTTATACAACAATACTAATAATATCATGGAAACAAATGGTCAAGAGATCATGCATACTAACTTGCAAGGTGATGATCACATAATGGTGGCATTGGAACCATTTAGAGATTCCTTCAATGGTGACACTTTCATAGACTTCAATGGAAATGTAATGTGTAATTTTGATGCTGGCTATGCATTTTCAAAATAA 801 0.3758 MSKMPVLKTGAWTPEEDKKLIAYVTQHGHGNWHSLPSRAGLLRCGKSCRRRWINYLRPDLKRGNFSLEEDQTITQLHALLGNKWATIAALLPRRTDNDIKNHWNTNIKKRLIKMGIDPITHKPKSNIKDNINIALKHKAQWESVRLEAEARSSMLSKVQTQPLICSSSSPNFSITKPNNAMDNMCAIMVANDDDPLYPNMHCNVLYNNTNNIMETNGQEIMHTNLQGDDHIMVALEPFRDSFNGDTFIDFNGNVMCNFDAGYAFSK* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2011 266 SMART sant 61 109 IPR001005 -
Tpr2g2011 266 SMART sant 8 58 IPR001005 -
Tpr2g2011 266 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Tpr2g2011 266 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Tpr2g2011 266 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Tpr2g2011 266 CDD SANT 64 107 IPR001005 -
Tpr2g2011 266 SUPERFAMILY Homeodomain-like 8 103 IPR009057 -
Tpr2g2011 266 CDD SANT 11 56 IPR001005 -
Tpr2g2011 266 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 187 - -
Tpr2g2011 266 Gene3D - 64 140 - -
Tpr2g2011 266 Gene3D - 6 62 - -
Tpr2g2011 266 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Tpr2g2011 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Tpr2g2011 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Tpr2g2011 266 PANTHER TRANSCRIPTION FACTOR MYB106 5 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2011 Tpr-Chr2 24041007 24044809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2011 7 158 MYB Transcription Factor Family AT5G15310 66.456 1.74e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g2011 Myb_DNA-binding 4.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2011 K09422 - gmx:100787150 265.003