Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2010 ATGAGTAGGATGCCAGGTATGAAGGCAGGAGCATGGACACAAGAAGAAGACAAAAAGCTTATAGCGTATGTTACTCAACATGGCCATGGAAACTGGCATTCTTTGCCCCCCAAAGCAGGTCTGCTAAGATGTGGAAAGAGTTGCAGACGGAGGTGGATTAACTATCTGAGACCTGATTTAAAACGAGGAAACTTTAGCTTGGAGGAAGATCAAACTATTACTCAACTGCATGCTCTTCTTGGGAACAAATGGTCAACGATAGCAGCTCTACTACCAAGGAGAACAGACAATGATATAAAGAATCATTGGAACGCTAACATCAAGAAAAGACTTATCAAAATGGGGATAGATCCCACCACTCACAAACCAAAATCCAACATCAAAGACAATATCAATATTGCTCTCAAACACAAGGCTCAATGGGAGAGTGTTAGATTGGAAACTGAAGCAAGATCATCAATGTTAGGCAAAATTCAAACTCAACCTTTAATATGTTCATCAAGTTCACCAAATTTTTCAATAACCAATCACAACAATGCAATGGATAACATGTGTGCCATCATGTTTGCAAATGATGATGTTGACCCTTTATTTCCAATGCATTGCAATGTTACATACAACAATACCAATAATATCATGGAAACAAGTGGTCAAGAGATCATGCATAGTTATGCGTCTAACTTGCAAGGTGATGATGACATAATGGTGGCATTGGAAGCTTTTAGAGATTCCTTCAATGTTGACACTTTCATGGACTTCAATGGAAATGGAATGTGTAAGTTTGATGCTGGCTATGCATTTTCAAAATAA 810 0.384 MSRMPGMKAGAWTQEEDKKLIAYVTQHGHGNWHSLPPKAGLLRCGKSCRRRWINYLRPDLKRGNFSLEEDQTITQLHALLGNKWSTIAALLPRRTDNDIKNHWNANIKKRLIKMGIDPTTHKPKSNIKDNINIALKHKAQWESVRLETEARSSMLGKIQTQPLICSSSSPNFSITNHNNAMDNMCAIMFANDDVDPLFPMHCNVTYNNTNNIMETSGQEIMHSYASNLQGDDDIMVALEAFRDSFNVDTFMDFNGNGMCKFDAGYAFSK* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2010 269 Gene3D - 10 61 - -
Tpr2g2010 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 191 - -
Tpr2g2010 269 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Tpr2g2010 269 CDD SANT 64 104 IPR001005 -
Tpr2g2010 269 PANTHER TRANSCRIPTION FACTOR MYB106 5 191 - -
Tpr2g2010 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Tpr2g2010 269 CDD SANT 11 56 IPR001005 -
Tpr2g2010 269 SMART sant 61 109 IPR001005 -
Tpr2g2010 269 SMART sant 8 58 IPR001005 -
Tpr2g2010 269 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Tpr2g2010 269 Pfam Myb-like DNA-binding domain 62 104 IPR001005 -
Tpr2g2010 269 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
Tpr2g2010 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Tpr2g2010 269 Gene3D - 63 142 - -
Tpr2g2010 269 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2010 Tpr-Chr2 23997227 24012787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2010 1 158 MYB Transcription Factor Family AT5G15310 62.722 2.88e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g2010 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2010 K09422 - gmx:100787150 265.388