Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2008 ATGGAAAGTAGAACTTGCTCTGAACTCCCACCTGGATTTAGGTTTCATCCAACTGATGAAGAATTAATTGTTTACTACCTTTGTAACCAAGCAACATCACAACCATGTCCTGCATCTATCATTCCAGAAGTTGATATCTATAAATTTGATCCATGGGAATTACCAGATAAATCAGATTTTGGAGAAAATGAATGGTATTTTTTTAGTCCAAGAGAGAGAAAATATCCAAATGGGGTTAGACCAAACAGAGCAACTGTTTCTGGGTATTGGAAAGCAACTGGAACAGATAAATCAATATTTAGTGGTTCTAACCATATTGGGGTTAAGAAAGCTTTGGTTTTTTACAAAGGTAGACCACCAAAGGGAATAAAAACAGATTGGATTATGCATGAATATAGGTTAATTGGATCAAGAAAACAATCCAATAGACAAATTGGATCCATGAGGCTAGATGATTGGGTGTTATGTAGAATCTATAAGAAGAAAAACATCACAAAATCATTGGAGACAAATGAGGACTACACAACAAACCAAATGAATATGACACAAACAAATGATGATAGTGAACAAGAATTGGTGAAATTTCCAAGGACATGTTCTCTTACTAATCTTTTGGAAATGGATTATTTGGGACCAATATCACAAATATTATCAGATGGATCATATAATTCAACTTTTGAATTTCAAATTAATACTGCACATGGTGGATTAATGGACCCATTTGTAAAATCACAAATGGTTGAAATGCCTAAAAACAACCCTTATGAAGGTGATTTAGAGAAATACCATGTGAAACAAAATAGCAGCCTTGGGAACCAAGTATTTTATCAAAGGGAATAG 840 0.3369 MESRTCSELPPGFRFHPTDEELIVYYLCNQATSQPCPASIIPEVDIYKFDPWELPDKSDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKSIFSGSNHIGVKKALVFYKGRPPKGIKTDWIMHEYRLIGSRKQSNRQIGSMRLDDWVLCRIYKKKNITKSLETNEDYTTNQMNMTQTNDDSEQELVKFPRTCSLTNLLEMDYLGPISQILSDGSYNSTFEFQINTAHGGLMDPFVKSQMVEMPKNNPYEGDLEKYHVKQNSSLGNQVFYQRE* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2008 279 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Tpr2g2008 279 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Tpr2g2008 279 PANTHER BNAC06G30680D PROTEIN 5 232 - -
Tpr2g2008 279 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Tpr2g2008 279 PANTHER NAC TRANSCRIPTION FACTOR 56 5 232 - -
Tpr2g2008 279 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2008 Tpr-Chr2 23961001 23962958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2008 1 216 NAC Transcription Factor Family AT1G69490 67.982 1.19e-114 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr2g2008 NAM 5.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2008 - - gmx:100170717 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2008 2 23961001 23962958 Tpr2g2008 2 23961001 23962958 ECH